|
| Status |
Public on Dec 11, 2013 |
| Title |
iMir: An integrated pipeline for high-throughput miRNA-Seq data analysis |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We report a novel modular pipeline (iMir) for comprehensive analysis of miRNA-Seq data, from linker removal and sequence quality check to differential expression and biological target prediction, integrating multiple open source modules and resources linker together in an automated flow.
|
| |
|
| Overall design |
Development of an integrated pipeline (iMir) for comprehensive analysis of miRNA-Seq experiment.
|
| |
|
| Contributor(s) |
Weisz A, Giurato G |
| Citation(s) |
24330401 |
| |
| Submission date |
Sep 05, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Maria Rosaria De Filippo |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Salerno
|
| Street address |
Via Allende 1
|
| City |
Baronissi |
| ZIP/Postal code |
84081 |
| Country |
Italy |
| |
|
| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA174404 |
| SRA |
SRP015409 |
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