 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Nov 13, 2024 |
| Title |
Positional information drives distinct traits in transcriptomically identified neuronal types |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We transcriptionally profiled the neuronal types of the zebrafish larvae optic tectum and matched them with their functional and morphological properties.
|
| |
|
| Overall design |
Wild type larvae were raised until 6 or 7 dpf. The optic tectum and torus longitudinalis of 6 and 7 dpf larvae were then carefully dissected under a stereoscope followed by cell dissociation and sequencing.
Please note that batches 5, 6, and 8 the raw data with technical replica (i.e. replica 1, replica 2) were processed together, and the resulting processed data is linked to the corresponding replica 1 sample records.
|
| Web link |
https://www.biorxiv.org/content/10.1101/2024.09.15.613138v1
|
| |
|
| Contributor(s) |
Shainer I, Baier H |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 06, 2024 |
| Last update date |
Nov 14, 2024 |
| Contact name |
Inbal Shainer |
| Organization name |
Max Planck Institute for Biological Intelligence
|
| Street address |
Am Klopferspitz 18
|
| City |
Martinsried |
| ZIP/Postal code |
82152 |
| Country |
Germany |
| |
|
| Platforms (2) |
| GPL20828 |
Illumina NextSeq 500 (Danio rerio) |
| GPL24995 |
Illumina NovaSeq 6000 (Danio rerio) |
|
| Samples (17)
|
| GSM8309051 |
optic tectum batch 4, scRNAseq |
| GSM8309052 |
optic tectum batch 5, replica 1, scRNAseq |
| GSM8309053 |
optic tectum batch 5, replica 2, scRNAseq |
| GSM8309054 |
optic tectum batch 6, replica 1, scRNAseq |
| GSM8309055 |
optic tectum batch 6, replica 2, scRNAseq |
| GSM8309056 |
optic tectum batch 7, scRNAseq |
| GSM8309057 |
optic tectum batch 8, replica 1, scRNAseq |
| GSM8309058 |
optic tectum batch 8, replica 2, scRNAseq |
| GSM8536809 |
optic tectum batch 10, scRNAseq |
| GSM8536810 |
optic tectum batch 10, scRNAseq, additional sequencing |
| GSM8536811 |
optic tectum batch 11, replica 1, scRNAseq |
| GSM8536812 |
optic tectum batch 11, replica 2, scRNAseq |
| GSM8536813 |
optic tectum batch 12, scRNAseq |
| GSM8536814 |
optic tectum batch 12, scRNAseq, additional sequencing |
|
| Relations |
| BioProject |
PRJNA1120771 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE269232_RAW.tar |
388.1 Mb |
(http)(custom) |
TAR (of MTX, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
Less...
More...