NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE21831 Query DataSets for GSE21831
Status Public on May 15, 2010
Title Transcriptome analysis of Streptococcus mutans biofilms in response to starch and sucrose.
Organism Streptococcus mutans UA159
Experiment type Expression profiling by array
Summary Transcriptional profiling to investigate the response of Streptococcus mutans biofilms to starch and sucrose at distinct stages of biofilm development.
 
Overall design RNA was extracted and purified from four replicate samples of each biofilm sample of interest and labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA159 cells grown to mid-log.
 
Contributor(s) Klein MI, Koo H, Lemos J
Citation(s) 20976057
Submission date May 14, 2010
Last update date Mar 18, 2020
Contact name Marlise I Klein
E-mail(s) [email protected]
Phone 585 276 0374
Organization name University of Rochester
Department Dentistry - Center for Oral Biology
Street address 601 Elmwood Ave.
City Rochester
State/province NY
ZIP/Postal code 14620
Country USA
 
Platforms (1)
GPL8255 Streptococcus mutans 10.7K oligonucleotide array version 1
Samples (48)
GSM543345 S. mutans UA159 0.5% sucrose biofilm 21h replicate 1
GSM543346 S. mutans UA159 0.5% sucrose biofilm 21h replicate 2
GSM543347 S. mutans UA159 0.5% sucrose biofilm 21h replicate 3
Relations
BioProject PRJNA126911

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE21831_RAW.tar 22.0 Mb (http)(custom) TAR (of MEV)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap