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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 06, 2009 |
| Title |
Streptococcus mutans 10.7K oligonucleotide array version 1 |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Streptococcus mutans UA159 |
| Manufacturer |
The Pathogen Functional Genomic Resource Center (PFGRC) |
| Manufacture protocol |
Glass slides with aminosiane coating, 4X replicate oligo printing
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| Submission date |
Mar 05, 2009 |
| Last update date |
Mar 06, 2009 |
| Contact name |
Yung-Hua Li |
| E-mail(s) |
[email protected]
|
| Phone |
902-494-3063
|
| Fax |
902-494-6621
|
| Organization name |
Dalhousie University
|
| Department |
Applied Oral Sciences
|
| Lab |
Biofilm Ecology and pathogenesis
|
| Street address |
5981 University Ave. Rm5215
|
| City |
Halifax |
| State/province |
NS |
| ZIP/Postal code |
B3H 3J5 |
| Country |
Canada |
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| Samples (59)
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GSM377978, GSM377979, GSM377980, GSM543345, GSM543346, GSM543347
GSM543348, GSM543349, GSM543350, GSM543351, GSM543352, GSM543353, GSM543354, GSM543355, GSM543356, GSM543357, GSM543358, GSM543359, GSM543360, GSM543361, GSM543362, GSM543363, GSM543364, GSM543365, GSM543366, GSM543367, GSM543368, GSM543369, GSM543370, GSM543371, GSM543372, GSM543373, GSM543374, GSM543375, GSM543376, GSM543377, GSM543378, GSM543379, GSM543380, GSM543381, GSM543382, GSM543383, GSM543384, GSM543385, GSM543386, GSM543387, GSM543388, GSM543389, GSM543390, GSM543391, GSM543392, GSM543941, GSM543942, GSM543943, GSM543944, GSM543945, GSM543946, GSM543947, GSM543948
|
| Series (3) |
| GSE15125 |
Acid-inducible genes in Streptococcus mutans: multiple two-component systems involved in acid adaptation |
| GSE21831 |
Transcriptome analysis of Streptococcus mutans biofilms in response to starch and sucrose. |
| GSE21872 |
Structural and molecular basis of the role of starch and sucrose in Streptococcus mutans biofilms development |
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| Data table header descriptions |
| ID |
|
| GB ACC AEO14133 |
GenBank accession number of sequence used to design oligonucleotide probe |
| SEQUENCE |
Sequence of the 70-mer oligonucleotide probe |
| ORF |
|
| SPOT_ID |
|
| Gene Description |
Gene description |
| Data table |
| ID |
GB ACC AEO14133 |
SEQUENCE |
ORF |
SPOT_ID |
Gene Description |
| 1 |
QSM00001_C_1 |
GGTTCATCTTTTTTCCTTTGTTAAGCTTATTTATTATGATATAATGAAGTATTCAATTGAAGAAAAAGTC |
SMU.1047c |
|
hypothetical protein |
| 2 |
QSM00001_G_1 |
GAAAATCGAAAAAGACTTCTCAGACAAGAGGCTTTAGGGCATTTTTTGATATAATAAGAAAAAAGATTAA |
SMU.1456c |
|
hypothetical protein |
| 3 |
QSM00001_K_1 |
TGAGGAAAATTCGTTTTTTAAAATTGTCCAAGTTCCTAAATCCAAAGGCATTGGCTTTGATATCTTTGAT |
SMU.2090c |
|
conserved hypothetical protein |
| 4 |
QSM00001_O_1 |
GCTTTTCGAAAGAAAAATCATAATGATTTGCGACACTCTGAAAGACTGCTATCAACTAACTTTCAGAGTG |
SMU.457 |
|
hypothetical protein |
| 5 |
QSM00001_D_1 |
CAGTTACACCAAATTCTTCTTCAATCGCTTTTACAAGATCGTTAAGCTCAAGGATTGAAGCTTCTTTAAT |
SMU.959c |
|
hypothetical protein |
| 6 |
QSM00001_H_1 |
GCAGGCTAAAAATGATGATGTTGAAACTTTTGATAGTTTTGATGATTGGAAATCAGAGATGAGTGCCTAT |
SMU.895 |
|
possible DNA-damage-inducible protein |
| 7 |
QSM00001_L_1 |
ATCAAGCTGTAGGCAAACAATATACCTACGGTAAAGGTATGGAGGAACTATCTGAAGTAGAACAACTACA |
SMU.1356c |
|
putative transposase fragment |
| 8 |
QSM00001_C_1 |
GGTTCATCTTTTTTCCTTTGTTAAGCTTATTTATTATGATATAATGAAGTATTCAATTGAAGAAAAAGTC |
SMU.1047c |
|
hypothetical protein |
| 9 |
QSM00001_G_1 |
GAAAATCGAAAAAGACTTCTCAGACAAGAGGCTTTAGGGCATTTTTTGATATAATAAGAAAAAAGATTAA |
SMU.1456c |
|
hypothetical protein |
| 10 |
QSM00001_K_1 |
TGAGGAAAATTCGTTTTTTAAAATTGTCCAAGTTCCTAAATCCAAAGGCATTGGCTTTGATATCTTTGAT |
SMU.2090c |
|
conserved hypothetical protein |
| 11 |
QSM00001_O_1 |
GCTTTTCGAAAGAAAAATCATAATGATTTGCGACACTCTGAAAGACTGCTATCAACTAACTTTCAGAGTG |
SMU.457 |
|
hypothetical protein |
| 12 |
QSM00001_D_1 |
CAGTTACACCAAATTCTTCTTCAATCGCTTTTACAAGATCGTTAAGCTCAAGGATTGAAGCTTCTTTAAT |
SMU.959c |
|
hypothetical protein |
| 13 |
QSM00001_H_1 |
GCAGGCTAAAAATGATGATGTTGAAACTTTTGATAGTTTTGATGATTGGAAATCAGAGATGAGTGCCTAT |
SMU.895 |
|
possible DNA-damage-inducible protein |
| 14 |
QSM00001_L_1 |
ATCAAGCTGTAGGCAAACAATATACCTACGGTAAAGGTATGGAGGAACTATCTGAAGTAGAACAACTACA |
SMU.1356c |
|
putative transposase fragment |
| 15 |
QSM00001_C_1 |
GGTTCATCTTTTTTCCTTTGTTAAGCTTATTTATTATGATATAATGAAGTATTCAATTGAAGAAAAAGTC |
SMU.1047c |
|
hypothetical protein |
| 16 |
QSM00001_G_1 |
GAAAATCGAAAAAGACTTCTCAGACAAGAGGCTTTAGGGCATTTTTTGATATAATAAGAAAAAAGATTAA |
SMU.1456c |
|
hypothetical protein |
| 17 |
QSM00001_K_1 |
TGAGGAAAATTCGTTTTTTAAAATTGTCCAAGTTCCTAAATCCAAAGGCATTGGCTTTGATATCTTTGAT |
SMU.2090c |
|
conserved hypothetical protein |
| 18 |
QSM00001_O_1 |
GCTTTTCGAAAGAAAAATCATAATGATTTGCGACACTCTGAAAGACTGCTATCAACTAACTTTCAGAGTG |
SMU.457 |
|
hypothetical protein |
| 19 |
QSM00001_D_1 |
CAGTTACACCAAATTCTTCTTCAATCGCTTTTACAAGATCGTTAAGCTCAAGGATTGAAGCTTCTTTAAT |
SMU.959c |
|
hypothetical protein |
| 20 |
QSM00001_H_1 |
GCAGGCTAAAAATGATGATGTTGAAACTTTTGATAGTTTTGATGATTGGAAATCAGAGATGAGTGCCTAT |
SMU.895 |
|
possible DNA-damage-inducible protein |
Total number of rows: 10752
Table truncated, full table size 1166 Kbytes.
| Supplementary data files not provided |
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