|
| Status |
Public on May 18, 2023 |
| Title |
Single-cell immunoprofiling of synovial helper T cell of rheumatoid arthritis patients. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Rheumatoid arthritis (RA) is a systemic autoimmune disease characterized by chronic destructive arthritis. Although helper T cells are involved in the pathogenesis of RA, the characteristics of synovium-infiltrating CD4+ T cells are still largely unknown. In this study, we investigated synovium-infiltrating helper T cells of rheumatoid arthritis patients
|
| |
|
| Overall design |
scRNA-seq and scVDJ-seq of 4 synovial helper T cells collected from Japanese RA patinets who underwent joint surgery.
|
| |
|
| Contributor(s) |
Tanaka S, Nakajima H |
| Citation(s) |
37184877 |
| |
| Submission date |
Oct 20, 2022 |
| Last update date |
May 18, 2023 |
| Contact name |
Shigeru Tanaka |
| E-mail(s) |
[email protected]
|
| Organization name |
Chiba University
|
| Department |
Allergy and Clinical Immunology
|
| Street address |
1-8-1 Inohana
|
| City |
Chiba |
| ZIP/Postal code |
2608670 |
| Country |
Japan |
| |
|
| Platforms (1) |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA892641 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE216245_DK21229_01_barcodes.tsv.gz |
326.1 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_01_consensus_annotations.csv.gz |
7.2 Kb |
(ftp)(http) |
CSV |
| GSE216245_DK21229_01_features.tsv.gz |
325.6 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_01_matrix.mtx.gz |
1.4 Mb |
(ftp)(http) |
MTX |
| GSE216245_DK21229_02_barcodes.tsv.gz |
1.3 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_02_consensus_annotations.csv.gz |
35.6 Kb |
(ftp)(http) |
CSV |
| GSE216245_DK21229_02_features.tsv.gz |
325.6 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_02_matrix.mtx.gz |
1.3 Mb |
(ftp)(http) |
MTX |
| GSE216245_DK21229_03_barcodes.tsv.gz |
5.4 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_03_consensus_annotations.csv.gz |
173.1 Kb |
(ftp)(http) |
CSV |
| GSE216245_DK21229_03_features.tsv.gz |
325.6 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_03_matrix.mtx.gz |
5.1 Mb |
(ftp)(http) |
MTX |
| GSE216245_DK21229_04_barcodes.tsv.gz |
9.0 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_04_consensus_annotations.csv.gz |
281.9 Kb |
(ftp)(http) |
CSV |
| GSE216245_DK21229_04_features.tsv.gz |
325.6 Kb |
(ftp)(http) |
TSV |
| GSE216245_DK21229_04_matrix.mtx.gz |
10.8 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
Less...
More...