NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE196400 Query DataSets for GSE196400
Status Public on Oct 20, 2023
Title Effect of the autoimmune suppressor Gadd45a on radiation biodosimetry
Organism Mus musculus
Experiment type Expression profiling by array
Summary Radiation biodosimetry based on transcriptomic analysis of peripheral blood is a valuable tool to detect radiation exposure after a radiological/nuclear event and obtain useful biological information that could predict tissue and organismal injury. However, confounding factors, including inflammation, can potentially obscure the predictive power of the method. The Gadd45 (growth arrest and DNA damage-inducible genes) family is composed of three members, Gadd45a, Gadd45b, and Gadd45g, that play important roles in cell growth control, differentiation, DNA repair, and apoptosis. Gadd45b and Gadd45g are important for inflammatory responses as well as mediating signals of the innate immune system, whereas Gadd45a is a negative regulator of activation-induced T cell proliferation. T cells from Gadd45a null mice are hyper-responsive to activating stimuli due to spontaneously increased p38MAPK activity. Importantly, Gadd45a-deficient mice develop an autoimmune disease, similar to human systemic lupus erythematosus, characterized by severe hematological disorders, kidney disease, and premature death. The goal of this study was to elucidate how pre-existing inflammatory condition in mice can affect radiation biodosimetry. We exposed wild-type and Gadd45a knockout C57BL/6J mice to 7 Gy x-rays and 24 h later we isolated whole blood and performed genome microarray and gene ontology analysis.
 
Overall design Radiation induced gene expression in blood from Gadd45aWT and Gadd45aKO mice was measured 24 h after 7 Gy of x-rays. Five or 9 (gadd45aKO_IR) independent experiments were performed at each Gadd45 genotype and treatment.
 
Contributor(s) Broustas CG
Citation(s) 37421415
Submission date Feb 09, 2022
Last update date Oct 21, 2023
Contact name Constantinos Broustas
Organization name Columbia University
Department Center for Radiological Research
Street address 630 168th Street
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL11202 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Probe Name version)
Samples (24)
GSM5880264 G45KO_0Gy_1d_rep1
GSM5880265 G45KO_0Gy_1d_rep2
GSM5880266 G45KO_0Gy_1d_rep3
Relations
BioProject PRJNA804718

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE196400_RAW.tar 212.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap