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Series GSE192464 Query DataSets for GSE192464
Status Public on Dec 21, 2023
Title Gene expression profiling in EORTC 90111 study, a window of opportunity trial with afatinib in HNSCC
Organism Homo sapiens
Experiment type Expression profiling by array
Summary In the EORTC 90111, open-label, randomised, multicentre, phase II trial, patients were treated with afatinib for 14 days (day 15 until day 1) before surgery (day 0). Tumour biopsies, 2-[fluorine-18]-fluoro-2-deoxy-d-glucose positron emission tomography (18-FDG PET) and magnetic resonance imaging (MRI) were performed at diagnosis and just before surgery. The main aim of the study was to identify predictive biomarkers among treatment-naive patients in this curative setting.
 
Overall design Eligible patients had to have a new histological diagnosis of HNSCC of the oral cavity, oropharynx, hypopharynx or larynx and be selected for primary curative surgery. Thirty-eight samples corresponding to paired pre- and post-treatment specimens belonging to 19 cases were profile for gene expression. The primary tumor needs to be ≥ 2 cm in their largest diameter measured bidimensionally by imaging done within two weeks prior to randomization. The primary outcome was the reduction in the tumor uptake volume as assessed by FDG-PET. The response to therapy was expressed as a continuous trait representing the change in SUVmax between the pre- and post-treatment as: ΔSUV = (SUVmax post – SUVmax pre)/SUVmax pre.
 
Contributor(s) De Cecco L
Citation(s) 35121395
Submission date Dec 22, 2021
Last update date Dec 21, 2023
Contact name Loris De Cecco
E-mail(s) [email protected]
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platforms (1)
GPL14951 Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip
Samples (38)
GSM5747474 Afa10 100896670094_B
GSM5747475 Afa11 100896670094_D
GSM5747476 Afa11 100896670094_E
Relations
BioProject PRJNA791613

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE192464_non-normalized.txt.gz 6.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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