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GEO accession:
Series GSE174628
Query DataSets for GSE174628
Status
Public on Mar 14, 2022
Title
The cohesin acetylation cycle controls chromatin loop length through a PDS5A brake mechanism
Organism
Homo sapiens
Experiment type
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35710836
Submission date
May 18, 2021
Last update date
Jun 21, 2022
Contact name
Angela Sedeno Cacciatore
E-mail(s)
[email protected]
,
[email protected]
Organization name
Netherlands Cancer Institute
Department
Gene regulation
Lab
Rowland lab
Street address
Plesmanlaan 121
City
Amsterdam
State/province
Noord-Holland
ZIP/Postal code
1066 CX
Country
Netherlands
Platforms (3)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
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GSM5320746
Wild Type G1 Replicate 1 HiC
GSM5320747
Wild Type G1 Replicate 2 HiC
GSM5320748
∆ESCO1 G1 Replicate 1 HiC
GSM5320749
∆ESCO1 G1 Replicate 2 HiC
GSM5320750
∆HDAC8 G1 Replicate 1 HiC
GSM5320751
∆HDAC8 G1 Replicate 2 HiC
GSM5320752
∆ESCO1/∆HDAC8 G1 Replicate 1 HiC
GSM5320753
∆WAPL G1 Replicate 1 HiC
GSM5320754
∆WAPL/∆ESCO1 G1 Replicate 1 HiC
GSM5320755
∆PDS5A G1 Replicate 1 HiC
GSM5320756
∆PDS5A/∆HDAC8 G1 Replicate 1 HiC
GSM5320757
∆HDAC8 synthetic viability screen
GSM5667009
Wild Type G1 Replicate 3 HiC
GSM5667010
Wild Type G1 Replicate 4 HiC
GSM5667011
Wild Type G1 Replicate 5 HiC
GSM5667012
∆PDS5B G1 Replicate 1 HiC
GSM5667013
∆WAPL G1 Replicate 2 HiC
GSM5667014
∆WAPL/∆ESCO1 G1 Replicate 2 HiC
GSM5667015
∆PDS5A G1 Replicate 2 HiC
GSM5667016
∆PDS5A/∆HDAC8 G1 Replicate 2 HiC
GSM5667017
∆ESCO1/∆HDAC8 G1 Replicate 2 HiC
GSM5667018
∆PDS5B G1 Replicate 2 HiC
GSM5667019
Wild Type Asynchronous Replicate 1 HiC
GSM5667020
∆HDAC8 Asynchronous Replicate 1 HiC
This SuperSeries is composed of the following SubSeries:
GSE150564
The cohesin acetylation cycle controls chromatin loop length through a PDS5A brake mechanism (Hi-C)
GSE174627
The cohesin acetylation cycle controls chromatin loop length through a PDS5A brake mechanism (synthetic viability screen)
Relations
BioProject
PRJNA730820
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE174628_RAW.tar
14.0 Gb
(http)
(custom)
TAR (of HIC)
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