NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE158033 Query DataSets for GSE158033
Status Public on Mar 30, 2022
Title RNA-seq analysis of CaSki/SiHa/HeLa cell lines
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We perfomed RNA-seq analysis using HPV16-postive CaSki and SiHa cells and HPV18-postive HeLa cells for HPV integration and gene expression analyses
 
Overall design Examination of HPV integration and expression in three cervical cancer cell lines
 
Contributor(s) Yu L, Majerciak V, Lobanov A, Mirza S, Band V, Liu H, Cam M, Zheng Z
Citation(s) 35579355, 37193066
Submission date Sep 16, 2020
Last update date Aug 10, 2023
Contact name Zhi-Ming Zheng
Organization name National Cancer Institute
Department Center for Cancer Research
Lab RNA Biology Laboratory
Street address Bldg. 535 Rm. 312
City Frederick
State/province Maryland
ZIP/Postal code 21702-1201
Country USA
 
Platforms (3)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (10)
GSM4785624 CaSki-1 RNA-seq
GSM4785625 CaSki-2 RNA-seq
GSM4785626 CaSki-3 RNA-seq
Relations
BioProject PRJNA663801
SRA SRP282573

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158033_RAW.tar 294.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap