|
| Status |
Public on Aug 28, 2020 |
| Title |
Multiomics profiling during onset of Salmon maturation |
| Organism |
Salmo salar |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.This contains multi-omics datasets transcriptomic (RNA-Seq), methylomic (WGBS), and epigenomics (ATAC-seq) obtained during onset of sexual maturation in Atlantic salmon. We used gene regulatory networks (GRNs) to integrate results from these multi-omic analyses to identify key regulators of maturation.
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| |
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| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
35650521 |
| |
| Submission date |
Aug 27, 2020 |
| Last update date |
Jun 21, 2022 |
| Contact name |
Amin Roushdy Mohamed |
| E-mail(s) |
[email protected]
|
| Organization name |
CSIRO
|
| Department |
Agriculture and Food
|
| Lab |
Aquaculture Genomics
|
| Street address |
306 Carmody Rd, University of Queensland
|
| City |
Brisbane |
| State/province |
Queensland |
| ZIP/Postal code |
4067 |
| Country |
Australia |
| |
|
| Platforms (3) |
| GPL23792 |
Illumina HiSeq 2500 (Salmo salar) |
| GPL24981 |
Illumina NovaSeq 6000 (Salmo salar) |
| GPL28848 |
Illumina NextSeq 500 (Salmo salar) |
|
| Samples (88)
|
|
| This SuperSeries is composed of the following SubSeries: |
| GSE156997 |
Multitissue DNA methylome profiling during onset of salmon maturation |
| GSE156998 |
Liver Chromatin accessibility landscapes during onset of salmon maturation |
| GSE157001 |
Multitissue transcriptomic profiling during onset of salmon maturation |
|
| Relations |
| BioProject |
PRJNA659751 |
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