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GEO accession:
Series GSE156390
Query DataSets for GSE156390
Status
Public on Sep 22, 2021
Title
Role of TFIP11 in U6 snRNA modification and splicing efficiency
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34789764
Submission date
Aug 18, 2020
Last update date
Nov 19, 2021
Contact name
Tina M O'Grady
E-mail(s)
[email protected]
Phone
504-988-1169
Organization name
Tulane Health Sciences Center
Department
Pathology
Street address
1430 Tulane Ave., SL79
City
New Orleans
State/province
LA
ZIP/Postal code
70112
Country
USA
Platforms (3)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (38)
Less...
More...
GSM4730028
HeLa siGI3_1 RNA-seq
GSM4730029
HeLa siGI3_2 RNA-seq
GSM4730030
HeLa siGI3_3 RNA-seq
GSM4730031
HeLa siTFIP11_1 RNA-seq
GSM4730032
HeLa siTFIP11_2 RNA-seq
GSM4730033
HeLa siTFIP11_3 RNA-seq
GSM4730034
HeLa siTFIP11-1 snRNA-seq
GSM4730035
HeLa siGl3-1 snRNA-seq
GSM4730036
HeLa siTFIP11-2 snRNA-seq
GSM4730037
HeLa siGL3-2 snRNA-seq
GSM4730038
HeLa siTFIP11-3 snRNA-seq
GSM4730039
HeLa siGl3-3 snRNA-seq
GSM4803574
HeLa-TFIP11-iCLIP_GGTT
GSM4803575
HeLa-TFIP11-iCLIP_TTGT
GSM4977739
HCT116-Mock-RiboMethSeq
GSM4977740
HCT116-siCtr-RiboMethSeq
GSM4977741
HCT116-siTFIP11-1-RiboMethSeq
GSM4977742
HCT116-siTFIP11-2-RiboMethSeq
GSM4977743
HCT116-siDHX15-1-RiboMethSeq
GSM4977744
HCT116-siDHX15-2-RiboMethSeq
GSM5225788
siGI3_1
GSM5225789
siGI3_2
GSM5225790
siGI3_3
GSM5225791
siDHX15_1
GSM5225792
siDHX15_2
GSM5225793
siDHX15_3
GSM5404839
HCT116-J1-mock-RiboMethSeq
GSM5404840
HCT116-J1-siCtr-RiboMethSeq
GSM5404841
HCT116-J1-siCoilin-1-RiboMethSeq
GSM5404842
HCT166-J1-siCoilin-2-RiboMethSeq
GSM5404843
HCT116-J2-mock-RiboMethSeq
GSM5404844
HCT116-J2-siCtr-RiboMethSeq
GSM5404845
HCT116-J2-siCoilin-1-RiboMethSeq
GSM5404846
HCT116-J2-siCoilin-2-RiboMethSeq
GSM5404847
HCT116-J3-mock-RiboMethSeq
GSM5404848
HCT116-J3-siCtr-RiboMethSeq
GSM5404849
HCT116-J3-siCoilin-1-RiboMethSeq
GSM5404850
HCT116-J3-SiCoilin-2-RiboMethSeq
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE156388
RNA-Seq of HeLa cells treated with siTFIP11
GSE156389
Small RNA-Seq of HeLa cells treated with siTFIP11
GSE158589
iCLIP of HeLa cells with anti-TFIP11 antibody
GSE163369
RiboMethSeq of HCT116 cells treated with siTFIP11 or siDHX15
GSE171446
RNA-Seq of HeLa cells treated with siDHX15
GSE179068
RiboMethSeq of HCT116 cells treated with siCoilin
Relations
BioProject
PRJNA657749
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE156390_RAW.tar
54.3 Mb
(http)
(custom)
TAR (of BEDGRAPH, TAB, TXT)
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