 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 18, 2018 |
| Title |
Effects of vitamin D on CEBPA binding in THP-1 cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Three independent repeats of ChIP-seq or ChIPmentation with THP-1 cells after treatment with either 1,25(OH)2D3 (VD) or control (EtOH) using antibody against CEBPA (3 time points).
|
| |
|
| Overall design |
THP-1 cells were treated with vitamin D (1,25(OH)2D3) or solvent (EtOH) for 2h, 8h or 24h before performing ChIP-seq or ChIPmentation with antibody against CEBPA.
|
| |
|
| Contributor(s) |
Seuter S, Neme A, Nurminen V, Carlberg C |
| Citation(s) |
30550771, 33753848 |
| |
| Submission date |
Dec 18, 2018 |
| Last update date |
Apr 06, 2021 |
| Contact name |
Carsten Carlberg |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Eastern Finland
|
| Department |
Institute of Biomedicine
|
| Street address |
Yliopistonranta 1D
|
| City |
Kuopio |
| ZIP/Postal code |
70211 |
| Country |
Finland |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (18)
|
| GSM3519055 |
THP-1 2h after EtOH treatment, 1st replicate CEBPA |
| GSM3519056 |
THP-1 2h after 1,25D treatment, 1st replicate CEBPA |
| GSM3519057 |
THP-1 2h after EtOH treatment, 2nd replicate CEBPA |
| GSM3519058 |
THP-1 2h after 1,25D treatment, 2nd replicate CEBPA |
| GSM3519059 |
THP-1 2h after EtOH treatment, 3rd replicate CEBPA |
| GSM3519060 |
THP-1 2h after 1,25D treatment, 3rd replicate CEBPA |
| GSM3519061 |
THP-1 8h after EtOH treatment, 1st replicate CEBPA |
| GSM3519062 |
THP-1 8h after 1,25D treatment, 1st replicate CEBPA |
| GSM3519063 |
THP-1 8h after EtOH treatment, 2nd replicate CEBPA |
| GSM3519064 |
THP-1 8h after 1,25D treatment, 2nd replicate CEBPA |
| GSM3519065 |
THP-1 8h after EtOH treatment, 3rd replicate CEBPA |
| GSM3519066 |
THP-1 8h after 1,25D treatment, 3rd replicate CEBPA |
| GSM3519067 |
THP-1 24h after EtOH treatment, 1st replicate CEBPA |
| GSM3519068 |
THP-1 24h after 1,25D treatment, 1st replicate CEBPA |
| GSM3519069 |
THP-1 24h after EtOH treatment, 2nd replicate CEBPA |
| GSM3519070 |
THP-1 24h after 1,25D treatment, 2nd replicate CEBPA |
| GSM3519071 |
THP-1 24h after EtOH treatment, 3rd replicate CEBPA |
| GSM3519072 |
THP-1 24h after 1,25D treatment, 3rd replicate CEBPA |
|
| This SubSeries is part of SuperSeries: |
| GSE119556 |
The pioneer factor CEBPA modulates vitamin D signaling |
|
| Relations |
| BioProject |
PRJNA510576 |
| SRA |
SRP173800 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE124032_RAW.tar |
6.3 Mb |
(http)(custom) |
TAR (of TXT) |
| GSE124032_THP1_CEBPA_2h_EtOH.tdf |
293.5 Mb |
(ftp)(http) |
TDF |
| GSE124032_THP1_CEBPA_merged_ET.txt.gz |
240.4 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...