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| Status |
Public on Dec 18, 2018 |
| Title |
Effects of vitamin D on histone modification H3K4me3 in THP-1 cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Three independent repeats of ChIP-seq from THP-1 after 2h and 8h treatment with 1,25D or EtOH (control), using antibody against histone marker H3K4me3.
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| Overall design |
THP-1 cells were treated with vitamin D or solvent (EtOH) for 2h and 8h before performing ChIP with antibodies against H3K4me3 (3 independent repeat experiments).
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| Contributor(s) |
Nurminen V, Neme A, Carlberg C |
| Citation(s) |
30550771, 33753848 |
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| Submission date |
Sep 05, 2018 |
| Last update date |
Apr 06, 2021 |
| Contact name |
Carsten Carlberg |
| E-mail(s) |
[email protected]
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| Organization name |
University of Eastern Finland
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| Department |
Institute of Biomedicine
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| Street address |
Yliopistonranta 1D
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| City |
Kuopio |
| ZIP/Postal code |
70211 |
| Country |
Finland |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (13)
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| GSM3377517 |
THP-1 2h after EtOH treatment, 1st replicate H3K4me3 |
| GSM3377518 |
THP-1 2h after 1,25D treatment, 1st replicate H3K4me3 |
| GSM3377519 |
THP-1 2h after EtOH treatment, 2nd replicate H3K4me3 |
| GSM3377520 |
THP-1 2h after 1,25D treatment, 2nd replicate H3K4me3 |
| GSM3377521 |
THP-1 2h after EtOH treatment, 3rd replicate H3K4me3 |
| GSM3377522 |
THP-1 2h after 1,25D treatment, 3rd replicate H3K4me3 |
| GSM3377523 |
THP-1 8h after EtOH treatment, 1st replicate H3K4me3 |
| GSM3377524 |
THP-1 8h after 1,25D treatment, 1st replicate H3K4me3 |
| GSM3377525 |
THP-1 8h after EtOH treatment, 2nd replicate H3K4me3 |
| GSM3377526 |
THP-1 8h after 1,25D treatment, 2nd replicate H3K4me3 |
| GSM3377527 |
THP-1 8h after EtOH treatment, 3rd replicate H3K4me3 |
| GSM3377528 |
THP-1 8h after 1,25D treatment, 3rd replicate H3K4me3 |
| GSM3377529 |
THP-1 input |
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| This SubSeries is part of SuperSeries: |
| GSE119556 |
The pioneer factor CEBPA modulates vitamin D signaling |
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| Relations |
| BioProject |
PRJNA489509 |
| SRA |
SRP159692 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE119555_RAW.tar |
1.5 Gb |
(http)(custom) |
TAR (of BED, TDF) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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