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Series GSE118613 Query DataSets for GSE118613
Status Public on Jun 16, 2019
Title Two miRNA signatures for identifying nasopharyngeal carcinoma from head-neck tumors and the normal
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Reports show that miRNAs have been implicated in various cancers and functions as both oncogenes and tumor suppressors in tumour initiation, progression, and response to treatment. Our study is conducted to identify circulating miRNA profile in NPC patients using whole blood samples with clinical significant diagnostic value. Microarray profiling identified 117 differentially expressed miRNAs (fold change≥1.5) between NPC patients and healthy control and 164 differentially expressed miRNAs (fold change≥1.5) between NPC and HNT patients and healthy control. Among them, we obtain two miRNA signatures to help to diagnose NPC.
 
Overall design All samples are randomly assigned to training group and validation group. By Lasso regression and adaptive boosting, we construct a diagnostic model in training set, and verify the accuracy of the microRNA signature in validation set.
 
Contributor(s) Wen W, Wang HY, Guo L
Citation(s) 31159814
Submission date Aug 15, 2018
Last update date Jun 16, 2019
Contact name Mei-Yin Zhang
E-mail(s) [email protected]
Organization name Sun Yat-sen University Cancer Center
Department State Key Laboratory of Oncology in South China
Street address 651 Dongfeng East Road
City Guangzhou
State/province Guangdong
ZIP/Postal code 510060
Country China
 
Platforms (1)
GPL19888 State Key Laboratory Human microRNA array 1858
Samples (180)
GSM3334304 microRNA profile of NPC1
GSM3334305 microRNA profile of NPC2
GSM3334306 microRNA profile of NPC3
Relations
BioProject PRJNA487646

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118613_RAW.tar 25.6 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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