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GEO accession:
Series GSE117395
Query DataSets for GSE117395
Status
Public on Apr 30, 2019
Title
Hominid-specific transposable elements and KRAB-ZFPs facilitate human embryonic genome activation and transcription in naïve hESCs
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31006620
Submission date
Apr 29, 2019
Last update date
Jan 05, 2021
Contact name
Julien Duc
E-mail(s)
[email protected]
Organization name
EPFL
Department
School of Life Science
Lab
LVG
Street address
Station 19 CH-1015 Lausanne
City
Lausanne
State/province
VAUD
ZIP/Postal code
1015
Country
Switzerland
Platforms (1)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (79)
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GSM3738296
RNA-seq_naive_hESC+dCAS9-KRAB_without_sgLTR7YB_rep1
GSM3738297
RNA-seq_naive_hESC+dCAS9-KRAB_without_sgLTR7YB_rep2
GSM3738298
RNA-seq_naive_hESC+dCAS9-KRAB_sgLTR7YB_A_rep1
GSM3738299
RNA-seq_naive_hESC+dCAS9-KRAB_sgLTR7YB_A_rep2
GSM3738300
RNA-seq_naive_hESC+dCAS9-KRAB_sgLTR7YB_B_rep1
GSM3738301
RNA-seq_naive_hESC+dCAS9-KRAB_sgLTR7YB_B_rep2
GSM3738302
RNA-seq_naive_hESC+GFP_rep1
GSM3738303
RNA-seq_naive_hESC+GFP_rep2
GSM3738304
RNA-seq_naive_hESC+ZNF611_rep1
GSM3738305
RNA-seq_naive_hESC+ZNF611_rep2
GSM3738306
RNA-seq_primed_hESC+GFP_rep1
GSM3738307
RNA-seq_primed_hESC+GFP_rep2
GSM3738308
RNA-seq_primed_hESC+GFP_rep3
GSM3738309
RNA-seq_primed_hESC+KLF4_rep1
GSM3738310
RNA-seq_primed_hESC+KLF4_rep2
GSM3738311
RNA-seq_primed_hESC+KLF4_rep3
GSM3738312
RNA-seq_primed_hESC+KLF17_rep1
GSM3738313
RNA-seq_primed_hESC+KLF17_rep2
GSM3738314
RNA-seq_naive_hESC+dCAS9-KRAB_Empty_rep1
GSM3738315
RNA-seq_naive_hESC+dCAS9-KRAB_Empty_rep2
GSM3738316
RNA-seq_naive_hESC+dCAS9-KRAB_Empty_rep3
GSM3738317
RNA-seq_naive_hESC+dCAS9-KRAB_Empty_rep4
GSM3738318
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_A_rep1
GSM3738319
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_A_rep2
GSM3738320
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_A_rep3
GSM3738321
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_A_rep4
GSM3738322
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_B_rep1
GSM3738323
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_B_rep2
GSM3738324
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_B_rep3
GSM3738325
RNA-seq_naive_hESC+dCAS9-KRAB_sgRNA_LTR5HS/SVA_B_rep4
GSM3738326
RNA-seq_iNeurons_hESC_dCAS9-KRAB+sgRNA_rep1
GSM3738327
RNA-seq_iNeurons_hESC_dCAS9-KRAB+sgRNA_rep2
GSM3738328
RNA-seq_iNeurons_hESC_dCAS9-KRAB_Empty_rep1
GSM3738329
RNA-seq_iNeurons_hESC_dCAS9-KRAB_Empty_rep2
GSM3738330
H3K27ac_naive_hESC+ZNF611_rep1
GSM3738331
H3K9me3_naive_hESC+ZNF611_rep1
GSM3738332
H3K27ac_naive_hESC+ZNF611_rep2
GSM3738333
H3K9me3_naive_hESC+ZNF611_rep2
GSM3738334
H3K27ac_naive_hESC+GFP_rep1
GSM3738335
H3K9me3_naive_hESC+GFP_rep1
GSM3738336
H3K27ac_naive_hESC+GFP_rep2
GSM3738337
H3K9me3_naive_hESC+GFP_rep2
GSM3738338
H3K27ac_primed_hESC+GFP_rep1
GSM3738339
H3K9me3_primed_hESC+GFP_rep1
GSM3738340
H3K27ac_primed_hESC+GFP_rep2
GSM3738341
H3K9me3_primed_hESC+GFP_rep2
GSM3738342
H3K27ac_primed_hESC+KLF17_rep1
GSM3738343
H3K9me3_primed_hESC+KLF17_rep1
GSM3738344
H3K27ac_primed_hESC+KLF17_rep2
GSM3738345
H3K9me3_primed_hESC+KLF17_rep2
GSM3738346
H3K27ac_primed_hESC+KLF4_rep1
GSM3738347
H3K9me3_primed_hESC+KLF4_rep1
GSM3738348
H3K27ac_primed_hESC+KLF4_rep2
GSM3738349
H3K9me3_primed_hESC+KLF4_rep2
GSM3738350
Input_+-611_naive_hESC
GSM3738351
Input_+-KLFs_primed_hESC
GSM3738352
H3K9me3_naive_hESC_dCAS9-KRAB_Empty_rep1
GSM3738353
Input_naive_hESC_dCAS9-KRAB_Empty_rep1
GSM3738354
H3K9me3_naive_hESC_dCAS9-KRAB_Empty_rep2
GSM3738355
Input_naive_hESC_dCAS9-KRAB_Empty_rep2
GSM3738356
H3K9me3_naive_hESC_dCAS9-KRAB+sgRNA_rep1
GSM3738357
Input_naive_hESC_dCAS9-KRAB+sgRNA_rep1
GSM3738358
H3K9me3_naive_hESC_dCAS9-KRAB+sgRNA_rep2
GSM3738359
Input_naive_hESC_dCAS9-KRAB+sgRNA_rep2
GSM3738360
KLF4_naive_hESC
GSM3738362
KLF4_HAP1+OKS
GSM3738363
H3K27ac_naive_hESC
GSM3738365
H3K27ac_primed_hESC
GSM3738368
H3K27ac_iNeuron
GSM3738369
ATAC-seq_naive_hESC_dCAS9-KRAB_Empty_rep1
GSM3738370
ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA_rep1
GSM3738371
ATAC-seq_naive_hESC_dCAS9-KRAB_Empty_rep2
GSM3738372
ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA_rep2
GSM3738373
ATAC-seq_naive_hESC_dCAS9-KRAB_Empty_rep3
GSM3738374
ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA_rep3
GSM3738375
ATAC-seq_primed_hESC_rep1
GSM3738376
ATAC-seq_primed_hESC_rep2
GSM3738377
ATAC-seq_naive_hESC_rep1
GSM3738378
ATAC-seq_naive_hESC_rep2
This SuperSeries is composed of the following SubSeries:
GSE130416
Hominid-specific transposable elements and KRAB-ZFPs facilitate human embryonic genome activation and transcription in naïve hESCs [RNA-seq]
GSE130417
Hominid-specific transposable elements and KRAB-ZFPs facilitate human embryonic genome activation and transcription in naïve hESCs [ChIP-seq]
GSE130418
Hominid-specific transposable elements and KRAB-ZFPs facilitate human embryonic genome activation and transcription in naïve hESCs [ATAC-seq]
Relations
BioProject
PRJNA540247
Download family
Format
SOFT formatted family file(s)
SOFT
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MINiML
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TXT
Supplementary file
Size
Download
File type/resource
GSE117395_RAW.tar
99.8 Mb
(http)
(custom)
TAR (of BED, TAB)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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