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Series GSE115291 Query DataSets for GSE115291
Status Public on Jun 27, 2019
Title Retrotransposon reactivation and mobilization upon deletions of megabase-scale KRAB zinc finger gene clusters in mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 32479262
Submission date Jun 04, 2018
Last update date Jun 16, 2020
Contact name Gernot Wolf
Organization name NIH
Department NICHD
Lab Macfarlan lab
Street address 6 Center Drive
City Bethesda
State/province Maryland
ZIP/Postal code 20892
Country USA
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (280)
GSM3173590 QXT1
GSM3173591 QXT2
GSM3173592 QXT3
This SuperSeries is composed of the following SubSeries:
GSE115285 Identification of novel ETn insertions in KRAB-ZFP cluster depleted mice
GSE115286 Genome-wide maps of chromatin state and KAP1 occupancy in KRAB zinc finger protein (KRAB-ZFP) gene cluster KO ES cells and testis
GSE115287 Genome-wide binding patterns of murine KRAB zinc finger proteins
Relations
BioProject PRJNA474486

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115291_RAW.tar 18.7 Gb (http)(custom) TAR (of BED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
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