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| Status |
Public on May 09, 2018 |
| Title |
Temporal expression of small RNAs during rice anther development |
| Organism |
Oryza sativa Japonica Group |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Sequencing of sRNA and PARE libraries was performed for tissues collected from developmentally staged young panicles and anthers in rice variety Nongken 58
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| Overall design |
We generated small RNA data during seven stages of panicle or anther development (3 reps per stage) in rice, and PARE data for selected stages of the same material.
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| Contributor(s) |
Meyers BC, Tamim S, Cai Z |
| Citation(s) |
29708601 |
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| Submission date |
Dec 18, 2017 |
| Last update date |
Jun 06, 2018 |
| Contact name |
Blake C. Meyers |
| E-mail(s) |
[email protected]
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| Phone |
314-587-1422
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| Organization name |
Donald Danforth Plant Science Center
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| Lab |
Meyers lab
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| Street address |
975 N Warson Road
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| City |
St. Louis |
| State/province |
MO |
| ZIP/Postal code |
63132 |
| Country |
USA |
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| Platforms (1) |
| GPL13834 |
Illumina HiSeq 2000 (Oryza sativa Japonica Group) |
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| Samples (25)
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| GSM2893486 |
0.5 to 1.0 cm panicles, rep 1 |
| GSM2893487 |
0.5 to 1.0 cm panicles, rep 2 |
| GSM2893488 |
0.5 to 1.0 cm panicles, rep 3 |
| GSM2893489 |
2.0 to 4.0 cm panicles, rep 1 |
| GSM2893490 |
2.0 to 4.0 cm panicles, rep 2 |
| GSM2893491 |
2.0 to 4.0 cm panicles, rep 3 |
| GSM2893492 |
6.0 to 8.0 cm panicles, rep 1 |
| GSM2893493 |
6.0 to 8.0 cm panicles, rep 2 |
| GSM2893494 |
6.0 to 8.0 cm panicles, rep 3 |
| GSM2893495 |
Anthers - microspore stage, rep 1 |
| GSM2893496 |
Anthers - microspore stage, rep 2 |
| GSM2893497 |
Anthers - microspore stage, rep 3 |
| GSM2893498 |
Anthers - mitosis stage, rep 1 |
| GSM2893499 |
Anthers - mitosis stage, rep 2 |
| GSM2893500 |
Anthers - mitosis stage, rep 3 |
| GSM2893501 |
Anthers - pollen stage, rep 1 |
| GSM2893502 |
Anthers - pollen stage, rep 2 |
| GSM2893503 |
Anthers - pollen stage, rep 3 |
| GSM2893504 |
2.0 to 4.0 cm panicles [pare] |
| GSM2893505 |
6.0 to 8.0 cm panicles, rep 1 [pare] |
| GSM2893506 |
6.0 to 8.0 cm panicles, rep 2 [pare] |
| GSM2893507 |
Anthers - microspore stage [pare] |
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| Relations |
| BioProject |
PRJNA422907 |
| SRA |
SRP126970 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE108238_RAW.tar |
1.3 Gb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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