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Platform GPL9931 Query DataSets for GPL9931
Status Public on Apr 07, 2010
Title Ectocarpus siliculosus tiling array ChIP1
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Ectocarpus siliculosus
Manufacturer Roche-Nimblegen
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire Ectocarpus siliculosus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://ectocarp.us
Submission date Jan 15, 2010
Last update date Apr 07, 2010
Contact name Manoj Samanta
E-mail(s) [email protected]
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (2) GSM497625, GSM497626
Series (1)
GSE19912 A high-resolution transcriptome map of Ectocarpus siliculosus

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (BLOCK1 = probes from genome sequence, CUSTOMER_CONTROL = control probes included in our design, RANDOM = random probes included by Nimblegen, NGS_CONTROLS, V_CODE, H_CODE = control probes included by Nimblegen)

Data table
ID X Y SEQUENCE PROBE_TYPE
65035315.105.191 105 191 AGAGGCGCCGCTTTTAAAAAATTTATCCCTACCCATGGTCCCTGTTCCCA BLOCK1
65021227.107.191 107 191 ATGCATACAGCGTTATAAATCTGCATGTTGGTCACGCGGACGTCTTGAAA BLOCK1
65184240.109.191 109 191 TGTATGTATGTATACGGACGGATATGAGTCACCCTCCCCGGGGCTATGTG BLOCK1
65208616.111.191 111 191 GCTCAGCACCCCTGCCACAAGCCGATCGAAGTCCGGGTGCAGCTTGTACA BLOCK1
65241226.113.191 113 191 TGCGTAAGAGCGTTCAGAGGAAGGGCCAAATGTAGCACAAGCGAGACACG BLOCK1
65008776.115.191 115 191 CGCATGGGACGGCATGTCGGCGCTTTACGTGGCTTGCAACGAGGGCCACT BLOCK1
65079429.119.191 119 191 AGAGAGTTACAGCAAGGCAAGCAGTAGCGGGCTCGAACACTAAACCGGAT BLOCK1
65179750.121.191 121 191 GCCGTGGGGGTGGCAACGGAAGTGGAAACAGCAGTCATATTTCCAAGACG BLOCK1
65113664.123.191 123 191 ATTTCACCGCCGAACGAGCCGAAGGACTTGCTCTCGTATTCCACGTGAAC BLOCK1
64965678.125.191 125 191 GTTTTGTCTGGGATGGCGAGCGTGCGCGCGTGGCTGACGCGAATGCGCAA BLOCK1
65192401.127.191 127 191 ATATCATGAATGATGAGCCGCGACACCGCGCACTGCCTCTTGGCCTGCTG BLOCK1
65235617.129.191 129 191 AAAGTTGAACCCTTCGCATCCATCAGGGACGTTCCCCGTGACATGCCCCT BLOCK1
65248232.131.191 131 191 AATCGTGCTTGGTAGCAAGCGGGTACCGCTTGAACACGTATCAAGGTCAA BLOCK1
65125151.133.191 133 191 CGCCTCGGCGTGTGCGGACCTTCTCCTCGAGGTATGCGCGCCTGCCTAGT BLOCK1
65048963.135.191 135 191 GTGAATTGGCCGCAAAATACGGGTGTTACTTTTGCCATGTATTGTATGCT BLOCK1
65231928.137.191 137 191 CAGCAGCAGCAGCACTGCCCCTCCTCCCGCCGACAGCACCACCAACCACG BLOCK1
65166239.139.191 139 191 TACATCGTTCGAGGATAACGAGGCGTGTTTTTGCGGTGGCGCTTTGCACG BLOCK1
65187915.141.191 141 191 TCAGAAATTGGTCTTTGGTGGAGGGCTTACATACGTCTGTCGCCATGATC BLOCK1
65308439.143.191 143 191 CACCGCTGTTATGTCGGCCCTCGCCTACGTCAAATTCGCATTCGATGTTC BLOCK1
65146437.145.191 145 191 CATCATGCGTGCCGCCAGCGTTACTGCCTGCGATTTGAGCTGGGTTGGCG BLOCK1

Total number of rows: 386131

Table truncated, full table size 31150 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9931_080130_Esili_MS_ChIP1.ndf.gz 14.4 Mb (ftp)(http) NDF

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