|
| Status |
Public on Apr 07, 2010 |
| Title |
Es1, Ectocarpus siliculosus tiling array Chip1 |
| Sample type |
RNA |
| |
|
| Source name |
cDNA from ectocarpus
|
| Organism |
Ectocarpus siliculosus |
| Characteristics |
test: Poly-A RNA pooled from mature sporophytes and gametophytes and from immature sporophytes stressed either in high salt medium or by addition of hydrogen peroxide, and converted to cDNA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA pooled from multiple sources were pooled together and converted into cDNA using standard protocol specificed by Nimblegen.
|
| Label |
Cy5
|
| Label protocol |
Standard Nimblegen protocol was used to generate labeled cDNA.
|
| |
|
| Hybridization protocol |
Hybridization was performed by Nimblegen at their Iceland core facility using Nimblegen protocol.
|
| Scan protocol |
Features were scanned using Nimblescan software.
|
| Description |
A High-Resolution Transcriptome Map of the Ectocarpus siliculosus
|
| Data processing |
Custom software tools were used for data processing. Quantile normalization was performed with data on all arrays.
|
| |
|
| Submission date |
Jan 15, 2010 |
| Last update date |
Apr 07, 2010 |
| Contact name |
Manoj Samanta |
| E-mail(s) |
[email protected]
|
| Phone |
408-472-7927
|
| Organization name |
Systemix Institute
|
| Street address |
2240 Homestead Court #309
|
| City |
Los Altos |
| State/province |
CA |
| ZIP/Postal code |
94024 |
| Country |
USA |
| |
|
| Platform ID |
GPL9931 |
| Series (1) |
| GSE19912 |
A high-resolution transcriptome map of Ectocarpus siliculosus |
|
