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Platform GPL8306 Query DataSets for GPL8306
Status Public on Jul 15, 2009
Title SMD Print_1381 Saccharomyces cerevisiae
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Saccharomyces cerevisiae
Manufacturer Stanford Functional Genomics Facility, Stanford School of Medicine
Manufacture protocol Material is transferred from microtiter plate wells to the slide surface by an automated print head
Support glass
 
 
Submission date Mar 16, 2009
Last update date Jul 15, 2009
Contact name Andre Gerber
E-mail(s) [email protected]
Phone +41 44 6337378
Fax +41 44 6337364
Organization name Swiss Federal Institute of Technology
Department Institute of Pharmaceutical Science
Street address Wolfgang Pauli Str. 10, HCI H396
City ETH Hoenggerberg, Zuerich
ZIP/Postal code ZH
Country Switzerland
 
Samples (68) GSM380861, GSM380862, GSM380863, GSM380864, GSM380865, GSM380866 
Series (9)
GSE15247 Shg1p associated RNAs
GSE16103 Wild-type versus trf4, trf5, and trf4-DADA mutant cells
GSE16105 Trf4p in vivo crosslinking and ribonucleoprotein-immunopurification-chip analysis (X-RIP-Chip)

Data table header descriptions
ID
MetaColumn
MetaRow
Column
Row
Reporter Name
Reporter Species
Reporter BioSequence [length]
SEQUENCE
Repoter Biosequence Type
Repoter BioSequence PolymerType
Reporter Group[role]
Reporter ControlType
CompositeSequence Name
ORF ORF Name
CompositeSequence BioSequence [Standard Name]
CompositeSequence BioSequence [SGDID]
CompositeSequence BioSequence [Gene Description]
CompositeSequence Biosequence Type
CompositeSequence BioSequence PolymerType
Plate Row
Plate Column
Failed
SPOT_ID

Data table
ID MetaColumn MetaRow Column Row Reporter Name Reporter Species Reporter BioSequence [length] SEQUENCE Repoter Biosequence Type Repoter BioSequence PolymerType Reporter Group[role] Reporter ControlType CompositeSequence Name ORF CompositeSequence BioSequence [Standard Name] CompositeSequence BioSequence [SGDID] CompositeSequence BioSequence [Gene Description] CompositeSequence Biosequence Type CompositeSequence BioSequence PolymerType Plate Row Plate Column Failed SPOT_ID
1 1 1 1 1 YAR002C-A_ORF Saccharomyces cerevisiae 70 CTGGTGGCTGGTTGATTAAGGCTAAAACGAAGATTGACGTTGAATTCCAAGTGGGCTCTGATGAAAAGTT ss_oligo DNA Experimental S000002129 YAR002C-A ERP1 S000002129 Protein that forms a heterotrimeric complex with Erp2p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles protein_coding_gene DNA A 8 0
20 1 1 1 2 YBR277C_ORF Saccharomyces cerevisiae 70 TTTCCTTTCGAATTCAGTTGTGCTAAGACCAGCGATTCTTCGACGAGATTCTGTACAAATAACTCAGCAG ss_oligo DNA Experimental S000000481 YBR277C S000000481 Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YBR278W protein_coding_gene DNA I 16 0
39 1 1 1 3 YDL138W_ORF Saccharomyces cerevisiae 70 CAAATACAGTCCAATGATCATATGATTGCGGCGGATAAAGGAAGTGGCTCGTTAGTAAACATCATCGATA ss_oligo DNA Experimental S000002297 YDL138W RGT2 S000002297 Plasma membrane glucose receptor, highly similar to Snf3p; both Rgt2p and Snf3p serve as transmembrane glucose sensors generating an intracellular signal that induces expression of glucose transporter (HXT) genes protein_coding_gene DNA A 24 1
58 1 1 1 4 YDR320C_ORF Saccharomyces cerevisiae 70 TGCAGAGAATATTTTCAGTACTTTAAGTATTGCTTGGGATAAGTTCAAACTGCAGAATGACATTAACTGA ss_oligo DNA Experimental S000002728 YDR320C SWA2 S000002728 Auxilin-like protein involved in vesicular transport; clathrin-binding protein required for uncoating of clathrin-coated vesicles protein_coding_gene DNA M 8 1
77 1 1 1 5 YER026C_ORF Saccharomyces cerevisiae 70 AACATCCCATTCGGCATTTTTAGAGAAGACCAAATATTGGAATTTCATCCAATTATTCTAGTATTTTTTA ss_oligo DNA Experimental S000000828 YER026C CHO1 S000000828 Phosphatidylserine synthase, functions in phospholipid biosynthesis; catalyzes the reaction CDP-diaclyglycerol + L-serine = CMP + L-1-phosphatidylserine, transcriptionally repressed by myo-inositol and choline protein_coding_gene DNA E 16 0
96 1 1 1 6 YGL125W_ORF Saccharomyces cerevisiae 70 TCTTCAACCTACCATTGTCGAGAAAATTTCGTTCTTAGCGTGGAAGGAGGAGTTCTATCATATCTTGAAT ss_oligo DNA Experimental S000003093 YGL125W MET13 S000003093 Isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway protein_coding_gene DNA M 24 0
115 1 1 1 7 YGR202C_ORF Saccharomyces cerevisiae 70 CAACGAATTTACGGGCGAAAACTCTACCGCTAAATCACCGGATGACAATGGAAATCTTTTCAGTCAGGAA ss_oligo DNA Experimental S000003434 YGR202C PCT1 S000003434 Cholinephosphate cytidylyltransferase, also known as CTP:phosphocholine cytidylyltransferase, rate-determining enzyme of the CDP-choline pathway for phosphatidylcholine synthesis, inhibited by Sec14p, activated upon lipid-binding protein_coding_gene DNA I 8 0
134 1 1 1 8 MCM038628_CMM Methanococcus jannaschii unknown_sequence DNA Control control_unknown_type A 16 0 CONTROL
153 1 1 1 9 YJL175W_ORF Saccharomyces cerevisiae 70 TGTGTTCGGAACAGTTGCTTCATCCTTCAGAGACTCATCTTGTTGCTGCGATTCTTCACCAGCAGTATCT ss_oligo DNA Experimental S000003711 YJL175W S000003711 Dubious open reading frame unlikely to encode a functional protein; deletion confers resistance to cisplatin, hypersensitivity to 5-fluorouracil, and growth defect at high pH with high calcium; overlaps gene for SWI3 transcription factor protein_coding_gene DNA I 24 0
172 1 1 1 10 MCD037853_CDP Methanococcus jannaschii unknown_sequence DNA Control control_unknown_type E 8 0 CONTROL
191 1 1 1 11 YLR168C_ORF Saccharomyces cerevisiae 70 AATAAGATGGAAGATTGGTCAGTTCAAAGGTTTTGCGAGAACGCTAAAAAGGGTAAAATGGGATTCGATG ss_oligo DNA Experimental S000004158 YLR168C S000004158 Putative protein of unknown function that may be involved in intramitochondrial sorting; similar to Ups1p and to human PRELI; GFP-tagged protein localizes to mitochondria; required for wild-type respiratory growth protein_coding_gene DNA M 16 0
210 1 1 1 12 IGR_CHR02:(COMPLEMENT(554916..555084))_31 Saccharomyces cerevisiae 70 GTTAATATGCAATCAAGTTGTAGGGAAGATTATATCTCTCCAGGGATTATTACCTGGGACACAGAGCTCT ss_oligo DNA Experimental E 24 0 IGR_CHR02:(COMPLEMENT(554916..555084))_31
229 1 1 1 13 YNL277W_ORF Saccharomyces cerevisiae 70 CATCACACGTAAACTGGATACGCACGATTTGGCAAGAGACAGAGTAGATGACATCACTGAGGTCCTTTCT ss_oligo DNA Experimental S000005221 YNL277W MET2 S000005221 L-homoserine-O-acetyltransferase, catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway protein_coding_gene DNA A 8 0
248 1 1 1 14 YNL081C_TIL_4_145__ORF Saccharomyces cerevisiae 70 ATTAAAATCGCACTGGCCTCTAAATTTTACGGCATAGGTAAAACAACAGCCGAAAAGATATGCTCGAAGT ss_oligo DNA Experimental S000005025 YNL081C SWS2 S000005025 Putative mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S13 ribosomal protein; participates in controlling sporulation efficiency protein_coding_gene DNA I 16 0
267 1 1 1 15 YPL060W_ORF Saccharomyces cerevisiae 70 AACAGAAACGAATTAATGCTGTTAGGGATAAGATACGCCATAGGAATGCTTTCGTTGGGAGGCGCTCTAT ss_oligo DNA Experimental S000005981 YPL060W LPE10 S000005981 Mitochondrial inner membrane magnesium transporter, involved in maintenance of magnesium concentrations inside mitochondria; indirectly affects splicing of group II introns; functionally and structurally related to Mrs2p protein_coding_gene DNA A 24 0
286 1 1 1 16 YLR087C_TIL_6601_6900_119_ORF Saccharomyces cerevisiae 70 AATGATAATTCTTATGCTAGTACCAGTGTCGAAAGTGCTTCGAGTAGTTTGGCTCCCTTTCTCGATAACA ss_oligo DNA Experimental S000004077 YLR087C CSF1 S000004077 Protein required for fermentation at low temperature; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies protein_coding_gene DNA M 8 0
305 1 1 1 17 EMPTY Saccharomyces cerevisiae unknown_sequence DNA Control control_empty E 16 0 CONTROL
324 1 1 1 18 ALIEN4_60 Saccharomyces cerevisiae 9 Alien4_60 unknown_sequence DNA Control control_unknown_type M 24 0 CONTROL
2 1 1 2 1 YAR008W_ORF Saccharomyces cerevisiae 70 GAATCTTCTTTGTTCATTGACATTGCTAATACCTCTATGATTTTAAGAGACATACGGAGTGATTCAGACA ss_oligo DNA Experimental S000000066 YAR008W SEN34 S000000066 Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease protein_coding_gene DNA A 16 0
21 1 1 2 2 YBR281C_ORF Saccharomyces cerevisiae 70 GGACGAAATTACTACTGCATGGGACGTAGAACCATTGCTAGTAAGAGAAGGAGGTTCTATTTCATGTTTG ss_oligo DNA Experimental S000000485 YBR281C DUG2 S000000485 Probable di- and tri-peptidase; forms a complex with Dug1p and Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p) protein_coding_gene DNA I 24 0

Total number of rows: 10944

Table truncated, full table size 3392 Kbytes.




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GPL8306.adf.gz 1.0 Mb (ftp)(http) ADF

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