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Platform GPL6983 Query DataSets for GPL6983
Status Public on Jun 23, 2008
Title Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C)
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
Catalog number WG-30-1001
 
Description over one million markers to interrogate human genetic variation using single nucleotide polymorphisms (SNPs) and copy number variation (CNV) probes
 
Web link http://www.illumina.com/pages.ilmn?ID=209
Submission date Jun 20, 2008
Last update date Jan 17, 2019
Organization Illumina Inc.
E-mail(s) [email protected], [email protected]
Phone 1 800 809 4566
URL http://www.illumina.com
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (374) GSM423709, GSM423710, GSM423711, GSM423712, GSM423713, GSM423714 
Series (12)
GSE16904 Illumina HapMap (1M)
GSE17557 Blood pooling experiments on ophthalmalogic phenotypes with Illumina arrays
GSE20284 Illumina SNP and CNV data for the HuRef individual
Relations
Alternative to GPL26040 (alternative)

Data table header descriptions
ID IlmnID
Name
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SEQUENCE SourceSeq
TopGenomicSeq
BeadSetId
CNV_Probe
Intensity_Only
Exp_Clusters
SNP_ID ncbi SNP accession
PROBE #PROBE = PROBE Name

Data table
ID Name IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SEQUENCE TopGenomicSeq BeadSetId CNV_Probe Intensity_Only Exp_Clusters SNP_ID PROBE
rs758676-126_B_F_IFB1136519662:0 rs758676 Bot [T/C] 10008 GACCAGTGTCTTTCTTCTTCCAGCATGGGGAACCATAACATCCTACTGGC 36 7 12878632 2 Homo sapiens dbSNP;refSNP 126 BOT TTTCCCAAAGGACCAGTGTCTTTCTTCTTCCAGCATGGGGAACCATAACATCCTACTGGC[C/T]CAAAGTCTCCTGGTGCTATAAAGTTGGCATTCCCAGATAACTTGTTGGCAGCTGGTACCC GGGTACCAGCTGCCAACAAGTTATCTGGGAATGCCAACTTTATAGCACCAGGAGACTTTG[A/G]GCCAGTAGGATGTTATGGTTCCCCATGCTGGAAGAAGAAAGACACTGGTCCTTTGGGAAA 1150456969 0 0 3 rs758676
rs3916934-123_B_F_IFB1136503411:0 rs3916934 Bot [T/C] 10010 AAATGAAGGCCTACATTTGTATCTCATTACTTCCCTCTATAGATTTCCAA 36 13 103143536 2 Homo sapiens dbSNP;refSNP 123 BOT ATTACCATATAAATGAAGGCCTACATTTGTATCTCATTACTTCCCTCTATAGATTTCCAA[C/T]GAATTTATGCTAGTATTTAAATTTCACATTTTCATTGAAGCTGATAATAATTATCAAaat attTTGATAATTATTATCAGCTTCAATGAAAATGTGAAATTTAAATACTAGCATAAATTC[A/G]TTGGAAATCTATAGAGGGAAGTAATGAGATACAAATGTAGGCCTTCATTTATATGGTAAT 1150456969 0 0 3 rs3916934
rs2711935-126_T_R_IFB1138365211:0 rs2711935 Top [A/G] 10014 CATACAATTGCTGAGTTTGGACATATGCACATACCTGTAAAACTATCAAC 36 4 38838852 2 Homo sapiens dbSNP;refSNP 126 BOT TCCGATCTTTTCTCAAACTCGTAATCAAAGTTATCTTTCTtatgtctattaccttgattg[T/C]gttgatagttttacaggtatgtgcatatgtccaaactcagcaattgtatgtgtagtttat ataaactacacatacaattgctgagtttggacatatgcacatacctgtaaaactatcaac[A/G]caatcaaggtaatagacataAGAAAGATAACTTTGATTACGAGTTTGAGAAAAGATCGGA 1155171409 0 0 3 rs2711935
rs17126880-123_T_R_IFB1140054009:0 rs17126880 Top [A/G] 10017 CTAGGCATCACAGGGACATTAACTCAATGTCACCATTTTTAGTGACCCAC 36 1 64922104 2 Homo sapiens dbSNP;refSNP 123 BOT TCCAAATGCATCATAAAATCAATAGAATTTAAATGCGTGTTGGCATCCTTTGAACCAGTA[C/T]GTGGGTCACTAAAAATGGTGACATTGAGTTAATGTCCCTGTGATGCCTAGAGGCAAAGCT AGCTTTGCCTCTAGGCATCACAGGGACATTAACTCAATGTCACCATTTTTAGTGACCCAC[A/G]TACTGGTTCAAAGGATGCCAACACGCATTTAAATTCTATTGATTTTATGATGCATTTGGA 1155171409 0 0 3 rs17126880
rs12831433-126_B_F_IFB1138385824:0 rs12831433 Bot [T/C] 10019 TACGACGTTTAGAATGGCATTTGCCACATGGTCTGGGAATAAATGTCAGC 36 12 4995220 2 Homo sapiens dbSNP;refSNP 126 BOT ttagcatgggtacgacgtttagaatggcatttgccacatggtctgggaataaatgtcagc[T/C]gtcattATGCTGTGGGTATATAAATACACTACTCCTTGCAATATCAGTTTTTGCCCACAC GTGTGGGCAAAAACTGATATTGCAAGGAGTAGTGTATTTATATACCCACAGCATaatgac[A/G]gctgacatttattcccagaccatgtggcaaatgccattctaaacgtcgtacccatgctaa 1155171409 0 0 3 rs12831433
rs12797197-126_B_F_IFB1138411445:0 rs12797197 Bot [T/C] 10020 ATCTACAGTTATCTCACCAGATACTCACAGTGAAGATGCCCTTGTAGCTC 36 11 81359825 2 Homo sapiens dbSNP;refSNP 126 BOT cacggcctttatctacagttatctcaccagatactcacagtgaagatgcccttgtagctc[T/C]ggctggggcggaggaagagcaatccttgtgaattacctccagagtatgctctgtaaaaca tgttttacagagcatactctggaggtaattcacaaggattgctcttcctccgccccagcc[A/G]gagctacaagggcatcttcactgtgagtatctggtgagataactgtagataaaggccgtg 1155171409 1 0 3 rs12797197
rs11002902-126_B_R_IFB1138389502:0 rs11002902 Bot [T/C] 10022 TGAGCCTTAATCCAGACTTCCAAGCACTCCTCAAATGTCTCAGCGTAAAA 36 10 80702561 2 Homo sapiens dbSNP;refSNP 126 TOP GAGAGGTGAGGGGAGCTCAGTGGGTTCACTTTAGACGAGTTGGGTGGTGCGTGCTTTTAC[A/G]TTTTACGCTGAGACATTTGAGGAGTGCTTGGAAGTCTGGATTAAGGCTCAGCATTGGCAG GAGAGGTGAGGGGAGCTCAGTGGGTTCACTTTAGACGAGTTGGGTGGTGCGTGCTTTTAC[A/G]TTTTACGCTGAGACATTTGAGGAGTGCTTGGAAGTCTGGATTAAGGCTCAGCATTGGCAG 1155171409 1 0 3 rs11002902
rs3924674-126_T_R_IFB1136512840:0 rs3924674 Top [A/G] 10025 TTTCATCACTTTGTATATGTATCATTGTGATGATTCATTTGTGTGTTTCT 36 5 76476752 2 Homo sapiens dbSNP;refSNP 126 BOT CTTCTAAAATCACAAATATCCTATATCTAAGTCTTTTAAATGCTACAAATGCCTTAAAAG[C/T]AGAAACACACAAATGAATCATCACAATGATACATATACAaagtgatgaaatatagctaaa tttagctatatttcatcacttTGTATATGTATCATTGTGATGATTCATTTGTGTGTTTCT[A/G]CTTTTAAGGCATTTGTAGCATTTAAAAGACTTAGATATAGGATATTTGTGATTTTAGAAG 1150456969 0 0 3 rs3924674
rs2147587-126_T_F_IFB1154866225:0 rs2147587 Top [A/G] 10026 GTAACTGGATACACGAAGAGACAAGATAGAAACAGCAGAAAAAACTCAAT 36 1 95487472 2 Homo sapiens dbSNP;refSNP 126 TOP ATGATCAGAGGTAACTGGATACACGAAGAGACAAGATAGAAACAGCAGAAAAAACTCAAT[G/A]GAAATCGGCTGGTTGTGGTTGCTCACATCTGTAATCCCAGGAACTTGGGAGGCTGAGGTG ATGATCAGAGGTAACTGGATACACGAAGAGACAAGATAGAAACAGCAGAAAAAACTCAAT[A/G]GAAATCGGCTGGTTGTGGTTGCTCACATCTGTAATCCCAGGAACTTGGGAGGCTGAGGTG 1155084259 1 0 3 rs2147587
rs11983370-126_T_R_IFB1140050766:0 rs11983370 Top [A/G] 10035 TTTCTCAGCCTCCCTGCAACTACGACTTTTCTAGATCATCCTCAGCCTTC 36 7 26586005 2 Homo sapiens dbSNP;refSNP 126 BOT CCCCAAGGGTTCTCCTCTGTTCCAGGGAAGGTGGCTGGAGGAGTGACTGAAGTTAAAGGT[C/T]GAAGGCTGAGGATGATCTAGAAAAGTCGTAGTTGCAGGGAGGCTGAGAAATGGGTGACGG CCGTCACCCATTTCTCAGCCTCCCTGCAACTACGACTTTTCTAGATCATCCTCAGCCTTC[A/G]ACCTTTAACTTCAGTCACTCCTCCAGCCACCTTCCCTGGAACAGAGGAGAACCCTTGGGG 1155171409 0 0 3 rs11983370
rs7167305-126_T_R_IFB1138332395:0 rs7167305 Top [A/C] 10037 GAGAGAGACTTCAATACAGAGCTGAGTTCAACTCCAAAAGCAGCGAGACA 36 15 89535811 2 Homo sapiens dbSNP;refSNP 126 BOT cctcTCAGTAATTTTCTACCCACTGACCCCCTTGTCTGCTTCTTGGCTGTAAATCCCAAG[G/T]TGTCTCGCTGCTTTTGGAGTTGAACTCAGCTCTGTATTGAAGTCTCTCTCCCCTACTGCG CGCAGTAGGGGAGAGAGACTTCAATACAGAGCTGAGTTCAACTCCAAAAGCAGCGAGACA[A/C]CTTGGGATTTACAGCCAAGAAGCAGACAAGGGGGTCAGTGGGTAGAAAATTACTGAgagg 1155171409 0 0 3 rs7167305
rs715350-126_B_R_IFB1136460923:0 rs715350 Bot [T/C] 10039 GAGATGAAAGGGTTTTCTTTTTTATACTTTTCTGTATTGTTTTAGGCTTG 36 18 59406159 2 Homo sapiens dbSNP;refSNP 126 TOP ATATTAATTGCTCTTTAAAAACTATTTTTGTGAAATGACAAAAGTAATGCAAGCTCATGT[A/G]CAAGCCTAAAACAATACAGAAAAGTATAAAAAAGAAAACCCTTTCATCTCCACCTAATAA ATATTAATTGCTCTTTAAAAACTATTTTTGTGAAATGACAAAAGTAATGCAAGCTCATGT[A/G]CAAGCCTAAAACAATACAGAAAAGTATAAAAAAGAAAACCCTTTCATCTCCACCTAATAA 1150456969 0 0 3 rs715350
rs2635442-126_T_R_IFB1136432512:0 rs2635442 Top [A/G] 10040 TTAACAGAATTACCCTAGAGCAATAATTTGCAAATGACTGGGGAACACAA 36 6 152563915 2 Homo sapiens dbSNP;refSNP 126 BOT AATAGGCTGATCATATCAAACGTACCTTTAAAAATGTTTTTCTTTCAAATTAAACATGCC[C/T]TTGTGTTCCCCAGTCATTTGCAAATTATTGCTCTAGGGTAATTCTGTTAAAAATTCGCAT ATGCGAATTTTTAACAGAATTACCCTAGAGCAATAATTTGCAAATGACTGGGGAACACAA[A/G]GGCATGTTTAATTTGAAAGAAAAACATTTTTAAAGGTACGTTTGATATGATCAGCCTATT 1150456969 0 0 3 rs2635442
rs7055953-123_T_R_IFB1138374757:0 rs7055953 Top [A/G] 10041 GAGGAGACATCAAAGGGTTTTAGGCAAAAGAGTACTGTAATCAGAAATGT 36 X 11196257 2 Homo sapiens dbSNP;refSNP 123 BOT GATATTTTGCACATTTAAGGCAAAAATATCATAGAATCACTGTCAAACTTTTTGAGTGAA[T/C]ACATTTCTGATTACAGTACTCTTTTGCCTAAAACCCTTTGATGTCTCCTCCTTAGCTCCA TGGAGCTAAGGAGGAGACATCAAAGGGTTTTAGGCAAAAGAGTACTGTAATCAGAAATGT[A/G]TTCACTCAAAAAGTTTGACAGTGATTCTATGATATTTTTGCCTTAAATGTGCAAAATATC 1155171409 0 0 3 rs7055953
rs7979673-116_B_F_IFB1138390720:0 rs7979673 Bot [T/C] 10044 TGGTACAGATGCACTGATGGATTTGCAGTGGGGGATTTCTGGCTATATCA 36 12 64513524 2 Homo sapiens dbSNP;refSNP 116 BOT TTTTTTTTTTTGGTACAGATGCACTGATGGATTTGCAGTGGGGGATTTCTGGCTATATCA[C/T]AGTACATAAAAAAAATGATGAGAGAACTTGTAATAGCAAAAAATTAATAGCCACCTAAAC GTTTAGGTGGCTATTAATTTTTTGCTATTACAAGTTCTCTCATCATTTTTTTTATGTACT[A/G]TGATATAGCCAGAAATCCCCCACTGCAAATCCATCAGTGCATCTGTACCAAAAAAAAAAA 1155171409 0 0 3 rs7979673
rs6424572-126_B_F_IFB1136436775:0 rs6424572 Bot [T/G] 10047 TATGCTGTGGCAAACTAGTGTGTTATTAATGGATAATAGGAGTGCTCAGA 36 1 74286533 2 Homo sapiens dbSNP;refSNP 126 BOT GCCCAACTGGTATGCTGTGGCAAACTAGTGTGTTATTAATGGATAATAGGAGTGCTCAGA[G/T]ACATTGATCACCCTGGGATGGTTATTTATTTCCATTTTACTTCAATTTTAATTGATCCTA TAGGATCAATTAAAATTGAAGTAAAATGGAAATAAATAACCATCCCAGGGTGATCAATGT[A/C]TCTGAGCACTCCTATTATCCATTAATAACACACTAGTTTGCCACAGCATACCAGTTGGGC 1150456969 0 0 3 rs6424572
rs10829026-120_B_F_IFB1136494680:0 rs10829026 Bot [T/C] 10048 TAATATTTGGAGAAAAGTAAGCTCTAAATCATGCTGTGTCAACTCATGGG 36 10 26897445 2 Homo sapiens dbSNP;refSNP 120 BOT TGCTATGTTTTAATATTTGGAGAAAAGTAAGCTCTAAATCATGCTGTGTCAACTCATGGG[C/T]TGCAGGTGGCCCAGGACCCCTTTGAATGCTGCCCAATACAAATTAAAATATTATAGCTCT AGAGCTATAATATTTTAATTTGTATTGGGCAGCATTCAAAGGGGTCCTGGGCCACCTGCA[A/G]CCCATGAGTTGACACAGCATGATTTAGAGCTTACTTTTCTCCAAATATTAAAACATAGCA 1150456969 0 0 3 rs10829026
rs7037313-126_B_F_IFB1136521486:0 rs7037313 Bot [T/C] 10050 GACCACTTACACGTGTCCTTCTTTCCATCCCCACTGAGCTGTGAGCTTTT 36 9 133154314 2 Homo sapiens dbSNP;refSNP 126 BOT GCACACCTGTGACCACTTACACGTGTCCTTCTTTCCATCCCCACTGAGCTGTGAGCTTTT[C/T]GCAGTGCGCCCAGCACTGACACACTGCCAGGCGCTCGGAAACTATTTACGGGTTGCCTGA TCAGGCAACCCGTAAATAGTTTCCGAGCGCCTGGCAGTGTGTCAGTGCTGGGCGCACTGC[A/G]AAAAGCTCACAGCTCAGTGGGGATGGAAAGAAGGACACGTGTAAGTGGTCACAGGTGTGC 1150456969 0 0 3 rs7037313
rs5920594-114_B_F_IFB1138334897:0 rs5920594 Bot [T/C] 10053 AGGTTCCTTCTTTATCTGCTGAAGCTACAGGATTCATGGACAGTACTTTA 36 X 144481834 2 Homo sapiens dbSNP;refSNP 114 BOT AGGGATTTCAAGGTTCCTTCTTTATCTGCTGAAGCTACAGGATTCATGGACAGTACTTTA[T/C]GGCAAAGTAAGCTCATAAGATTGTGTGTTTACATCACTTTGGGAATTAAAGCACATCATG CATGATGTGCTTTAATTCCCAAAGTGATGTAAACACACAATCTTATGAGCTTACTTTGCC[A/G]TAAAGTACTGTCCATGAATCCTGTAGCTTCAGCAGATAAAGAAGGAACCTTGAAATCCCT 1155171409 0 0 3 rs5920594
rs16972915-123_B_F_IFB1138342491:0 rs16972915 Bot [T/C] 10056 AACAGAAAGCCTGCAGTGACGATGACTATTAGCTACATTTAACTTTGAAA 36 17 63889403 2 Homo sapiens dbSNP;refSNP 123 BOT AGTCGTGGGCAACAGAAAGCCTGCAGTGACGATGACTATTAGCTACATTTAACTTTGAAA[C/T]GTGCTGTGTTCTCTTCCCGATCTTGCCCCTTGCCCTCCTTCCCTGGGAATGAGTGCTCTC GAGAGCACTCATTCCCAGGGAAGGAGGGCAAGGGGCAAGATCGGGAAGAGAACACAGCAC[A/G]TTTCAAAGTTAAATGTAGCTAATAGTCATCGTCACTGCAGGCTTTCTGTTGCCCACGACT 1155171409 0 0 3 rs16972915

Total number of rows: 1072820

Table truncated, full table size 471932 Kbytes.




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Supplementary file Size Download File type/resource
GPL6983_Human1Mv1_C.csv.gz 112.5 Mb (ftp)(http) CSV

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