NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL6186 Query DataSets for GPL6186
Status Public on Dec 04, 2007
Title TMHRI_GAS
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Streptococcus pyogenes
Manufacturer Affymetrix
Manufacture protocol Standard Affymetrix procedures.
Catalog number N/A
 
 
Contributor(s) Sumby P
Submission date Nov 27, 2007
Last update date Aug 24, 2009
Contact name Paul Sumby
Organization name University of Nevada
Department Microbiology & Immunology
Street address 1554 N. Virginia St.
City Reno
State/province NV
ZIP/Postal code 89557
Country USA
 
Samples (27) GSM247263, GSM247265, GSM247266, GSM247267, GSM247279, GSM247281 
Series (4)
GSE9793 Expression comparison between MGAS2221 and isogenic spyCEP mutant
GSE10156 Analysis of the group A Streptococcus CcpA Transcriptome
GSE17789 Tiling microarray-based identification of small regulatory RNAs in the group A Streptococcus (GAS)
Relations
Affiliated with GPL9080
Affiliated with GPL9953

Data table header descriptions
ID
RANGE_GB Genome
RANGE_START ORF start position in genome
RANGE_END ORF end position in genome
RANGE_STRAND + or - strand
Protein Description Function of the proposed ORF
Gene Length Gene of gene

Data table
ID RANGE_GB RANGE_START RANGE_END RANGE_STRAND Protein Description Gene Length
M5005_Spy_0001.rc_s_at NC_007297.1 202 1554 - Chromosomal replication initiator protein dnaA 1352
M5005_Spy_0001_s_at NC_007297.1 202 1554 + Chromosomal replication initiator protein dnaA 1352
M5005_Spy_0002.rc_s_at NC_007297.1 1712 2845 - DNA polymerase III, beta chain (EC 2.7.7.7) 1133
M5005_Spy_0002_s_at NC_007297.1 1712 2845 + DNA polymerase III, beta chain (EC 2.7.7.7) 1133
M5005_Spy_0003.rc_at NC_007297.1 2923 3117 - Hypothetical cytosolic protein 194
M5005_Spy_0003_s_at NC_007297.1 2923 3117 + Hypothetical cytosolic protein 194
M5005_Spy_0004.rc_s_at NC_007297.1 3450 4562 - GTP-binding protein, probable translation factor 1112
M5005_Spy_0004_s_at NC_007297.1 3450 4562 + GTP-binding protein, probable translation factor 1112
M5005_Spy_0005.rc_s_at NC_007297.1 4635 5201 - Peptidyl-tRNA hydrolase (EC 3.1.1.29) 566
M5005_Spy_0005_s_at NC_007297.1 4635 5201 + Peptidyl-tRNA hydrolase (EC 3.1.1.29) 566
M5005_Spy_0006.rc_s_at NC_007297.1 5207 8707 - Transcription-repair coupling factor 3500
M5005_Spy_0006_s_at NC_007297.1 5207 8707 + Transcription-repair coupling factor 3500
M5005_Spy_0007.rc_at NC_007297.1 8872 9141 - Heat shock protein 15 269
M5005_Spy_0007_s_at NC_007297.1 8872 9141 + Heat shock protein 15 269
M5005_Spy_0008.rc_s_at NC_007297.1 9131 9499 - Cell division protein DIVIC 368
M5005_Spy_0008_s_at NC_007297.1 9131 9499 + Cell division protein DIVIC 368
M5005_Spy_0009.rc_x_at NC_007297.1 9499 9621 - Hypothetical protein 122
M5005_Spy_0010.rc_s_at NC_007297.1 9637 10920 - Beta-lactamase (EC 3.5.2.6) 1283
M5005_Spy_0010_s_at NC_007297.1 9637 10920 + Beta-lactamase (EC 3.5.2.6) 1283
M5005_Spy_0011.rc_s_at NC_007297.1 10920 12203 - tRNA(Ile)-lysidine synthetase TilS 1283

Total number of rows: 3755

Table truncated, full table size 332 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6186.cdf.gz 5.4 Mb (ftp)(http) CDF
GPL6186_TMHRI-JMa520400_probe_sequences.txt.gz 12.3 Mb (ftp)(http) TXT
GPL6186_Tiling.cif.gz 716 b (ftp)(http) CIF
GPL6186_Tiling.grc.gz 19.5 Kb (ftp)(http) GRC
GPL6186_probe_sequences_readme.txt 1.1 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap