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Status
Public on Aug 17, 2006
Title
Agilent-014707 Human Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2 G4489A (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4489A
Description
Submission date
Aug 17, 2006
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (130)
GSM180123 , GSM180314 , GSM180316 , GSM180319 , GSM180321 , GSM180323
GSM180326 ,
GSM180339 ,
GSM180341 ,
GSM180344 ,
GSM238444 ,
GSM238446 ,
GSM238448 ,
GSM238450 ,
GSM281580 ,
GSM281592 ,
GSM281699 ,
GSM281701 ,
GSM283911 ,
GSM283912 ,
GSM283913 ,
GSM283914 ,
GSM283915 ,
GSM346091 ,
GSM346092 ,
GSM346093 ,
GSM346094 ,
GSM346095 ,
GSM346096 ,
GSM346097 ,
GSM346098 ,
GSM346099 ,
GSM346100 ,
GSM346101 ,
GSM346102 ,
GSM346103 ,
GSM346104 ,
GSM346105 ,
GSM346106 ,
GSM346107 ,
GSM346108 ,
GSM346109 ,
GSM346110 ,
GSM374878 ,
GSM374879 ,
GSM374880 ,
GSM374881 ,
GSM374882 ,
GSM374883 ,
GSM374884 ,
GSM374885 ,
GSM374886 ,
GSM374887 ,
GSM374888 ,
GSM374889 ,
GSM375848 ,
GSM375861 ,
GSM402832 ,
GSM402834 ,
GSM402836 ,
GSM402838 ,
GSM402840 ,
GSM402842 ,
GSM402844 ,
GSM402846 ,
GSM402848 ,
GSM402850 ,
GSM402852 ,
GSM402854 ,
GSM402856 ,
GSM402858 ,
GSM402860 ,
GSM402862 ,
GSM402864 ,
GSM402866 ,
GSM442663 ,
GSM442665 ,
GSM442667 ,
GSM442669 ,
GSM468270 ,
GSM468271 ,
GSM570354 ,
GSM570356 ,
GSM570358 ,
GSM570360 ,
GSM585185 ,
GSM585186 ,
GSM634473 ,
GSM634474 ,
GSM635413 ,
GSM635415 ,
GSM639395 ,
GSM639396 ,
GSM639399 ,
GSM639400 ,
GSM661302 ,
GSM661304 ,
GSM661306 ,
GSM661308 ,
GSM661310 ,
GSM661312 ,
GSM661314 ,
GSM661316 ,
GSM661318 ,
GSM661320 ,
GSM661322 ,
GSM661324 ,
GSM661326 ,
GSM661328 ,
GSM661330 ,
GSM661332 ,
GSM661334 ,
GSM661336 ,
GSM661338 ,
GSM661340 ,
GSM661342 ,
GSM661344 ,
GSM661346 ,
GSM661348 ,
GSM934073 ,
GSM934074 ,
GSM934077 ,
GSM934078 ,
GSM969964 ,
GSM996306 ,
GSM996307 ,
GSM996308 ,
GSM996309 ,
GSM996310 ,
GSM1055161 Series (25)
GSE7449 Genome-wide analysis reveals determinants of redundant and specific binding within a transcription factor family
GSE9367 IRF4 ChIP-on-chip for Myeloma Cell Lines
GSE11173 Defining a Chromatin Pattern That Characterizes DNA Hypermethylated Genes in Colon Cancer Cells
GSE11245 Genome-Wide profile of c-Myc binding in HL60 cells
GSE13749 Genome-wide characterization of the transcriptional program of Myc-dependent transformation, ChIP-chip
GSE14264 Genome-wide characterization of the transcriptional program of Myc-dependent transformation
GSE15002 Identification of Myc target genes in xenograft tissue derived from human lung cancers
GSE15052 NPAS2 ChIP-on-chip in MCF7 cells
GSE15594 Distinctive Chromatin in Human Sperm Packages Genes that Guide Embryo Development
GSE15701 Distinctive Chromatin in Human Sperm Packages Genes that Guide Embryo Development: ChIP-chip
GSE17733 Delineation of EZH2 oncogenic functions in hepatocellular carcinoma
GSE18892 Silencing of AEBP1 in U87MG glial cells and Chip-chIP with AEBP1 antibody
GSE23170 ChIP-on-chip experiment from Ramos cells to analyze genome-wide CRTC2 binding sites in germinal center B cells
GSE23171 CRTC2 couples genotoxic stress and plasma cell differentiation in the germinal center
GSE23709 Poly(ADP-ribose) polymerase 3: a key regulator of ectodermal specification and neural crest development.
GSE25824 CpG Methylation profile of Invasive Prostate Cancer Cells compared to Non-invasive
GSE25884 Delineation of AR oncogenic functions in hepatocellular carcinoma
GSE26035 Chromatin-associated protein kinase C-0 regulates an inducible gene expression program and microRNAs in human T lymphocytes
GSE26861 Genomic Binding of Human Linker Histone H1.5 during differentiation (ChIP-chip)
GSE26979 Human Linker Histone H1.5
GSE38076 CpG Methylation profile of Invasive Pancreatic Cancer Cells compared to Non-invasive
GSE39490 Helicobacter pylori-mediated Epigenetic Dysregulation of FOXD3 Tumor-suppressive Cascade In Gastric Carcinogenesis [ChIP]
GSE39600 Helicobacter pylori-mediated Epigenetic Dysregulation of FOXD3 Tumor-suppressive Cascade In Gastric Carcinogenesis
GSE40554 Identifying chromatin associations with promyelocytic leukemia nuclear bodies using immunoTRAP
GSE43018 Identification of GATA1 transcriptional regulation in the megakaryoblastic cell line Meg01
Relations Alternative to
GPL8170
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]
Data table ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE 1
267
912
HsCGHBrightCorner
pos
2
267
910
DarkCorner
pos
3
267
908
DarkCorner
pos
4
267
906
A_17_P10337025
FALSE
NM_024819 DCAKD
ref|NM_024819|ref|DCAKD:25846|mgc|BC018132:-170|mgc|BC006472:25846|ens|ENST00000310604:16489
chr17:040468041-040468092
INSIDE
NC_000017.9[040468041..040468092]
5
267
904
A_17_P17399900
FALSE
NM_019556 MOSPD1
ref|NM_019556|ref|MOSPD1:499|mgc|BC005700:479
chrX:133774296-133774340
INSIDE
NC_000023.8[133774296..133774340]
6
267
902
A_17_P07475610
FALSE
NM_005871 SMNDC1
ref|NM_005871|ref|SMNDC1:-1771|mgc|BC011234:-1771
chr10:112056429-112056488
PROMOTER
NC_000010.8[112056429..112056488]
7
267
900
A_17_P11858519
FALSE
NM_000533 PLP1
ref|NM_000533|ref|PLP1:-5189|ref|NM_199478:-5189
chrX:102832687-102832731
PROMOTER
NC_000023.8[102832687..102832731]
8
267
898
A_17_P10084768
FALSE
NM_000196 HSD11B2
ref|NM_000196|ref|HSD11B2:778|mgc|BC036780:778
chr16:066023292-066023336
INSIDE
NC_000016.8[066023292..066023336]
9
267
896
A_17_P09636118
FALSE
NM_024966 SEMA6D
ref|NM_024966|ref|SEMA6D:2223|ref|NM_020858:2223
chr15:045800171-045800230
INSIDE
NC_000015.8[045800171..045800230]
10
267
894
A_17_P11850388
FALSE
NM_013955 NOX1
ref|NM_013955|ref|NOX1:1066|ref|NM_013954:1066|ens|ENST00000330752:15412
chrX:099934248-099934307
INSIDE
NC_000023.8[099934248..099934307]
11
267
892
A_17_P16464213
FALSE
NM_024036 LRFN4
ref|NM_024036|ref|LRFN4:-382|ref|NM_022172:50832|ref|NM_000920:97290|mgc|BC015581:-382|mgc|BC011617:101246
chr11:066381144-066381188
PROMOTER
NC_000011.8[066381144..066381188]
12
267
890
A_17_P10321492
FALSE
NM_032524 KRTAP4-4
ref|NM_032524|ref|KRTAP4-4:921|ens|ENST00000333822:881
chr17:036569559-036569618
INSIDE
NC_000017.9[036569559..036569618]
13
267
888
A_17_P09532883
FALSE
NM_001014432 AKT1
ref|NM_001014432|ref|AKT1:-4177|ref|NM_005163:-6319|ref|NM_001014431:-4177|ens|ENST00000313847:-1271|ens|ENST00000342537:650209
chr14:104337280-104337324
PROMOTER
NC_000014.7[104337280..104337324]
14
267
886
A_17_P08399652
FALSE
NM_175895 FLJ25590
ref|NM_175895|ref|FLJ25590:914|ens|ENST00000325077:818
chr12:061282545-061282589
INSIDE
NC_000012.9[061282545..061282589]
15
267
884
A_17_P17177047
FALSE
NM_021220 OVOL2
ref|NM_021220|ref|OVOL2:716|mgc|BC006148:721|ens|ENST00000278780:1888
chr20:017985783-017985827
INSIDE
NC_000020.9[017985783..017985827]
16
267
882
A_17_P08274599
FALSE
NM_183378 OVCH1
ref|NM_183378|ref|OVCH1:1286|ens|ENST00000318184:1286
chr12:029540571-029540630
INSIDE
NC_000012.9[029540571..029540630]
17
267
880
A_17_P11857768
FALSE
ens|ENST00000255506:-1951
chrX:102635323-102635382
Unknown
NC_000023.8[102635323..102635382]
18
267
878
A_17_P10213318
FALSE
NM_020795 NLGN2
ref|NM_020795|ref|NLGN2:1308|ens|ENST00000302926:1308
chr17:007253509-007253557
INSIDE
NC_000017.9[007253509..007253557]
19
267
876
A_17_P11916232
FALSE
NM_006978 RNF113A
ref|NM_006978|ref|RNF113A:-4514|ref|NM_004541:4571
chrX:118792157-118792216
PROMOTER
NC_000023.8[118792157..118792216]
20
267
874
A_17_P07269055
FALSE
NM_199452 ZNF365
ref|NM_199452|ref|ZNF365:118280|ref|NM_199451:264536|mgc|BC101083:-5046
chr10:064068463-064068522
INSIDE
NC_000010.8[064068463..064068522]
243504 43210 Kbytes .Supplementary data files not provided
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