NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL30481 Query DataSets for GPL30481
Status Public on Dec 22, 2021
Title NanoString Prognostic Liver Signature (PLS) plus liver fibrosis panel (186-gene PLS + 24-gene extension)
Technology type other
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NanoString
Manufacture protocol See manufacturer's website
 
 
Submission date Aug 05, 2021
Last update date Aug 05, 2021
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Samples (9) GSM5504757, GSM5504758, GSM5504759, GSM5504760, GSM5504761, GSM5504762 
Series (2)
GSE85550 Molecular signature predictive of long-term liver fibrosis progression to inform anti-fibrotic drug development
GSE181538 Expression profiling of Prognostic Liver Signature and fibrosis-related genes in clinical fibrotic liver tissue cultured with various anti-fibrotic agents

Data table header descriptions
ID
Probe.group
Probe.category
Fibrosis.gene.category
EntrezGeneID
Alternative symbol
GB_ACC GenBank Accession number

Data table
ID Probe.group Probe.category Fibrosis.gene.category EntrezGeneID Alternative symbol GB_ACC
FSHB signature Poor_prognosis_gene na 2488 FSHB NM_000510.2
SH3GL2 signature Poor_prognosis_gene na 6456 SH3GL2 NM_003026.2
RBM34 signature Poor_prognosis_gene na 23029 RBM34 NM_015014.2
NCAPH signature Poor_prognosis_gene na 23397 NCAPH NM_015341.3
EGF signature Poor_prognosis_gene Myofibroblast regulation (EGF) 1950 EGF NM_001963.4
TRIO signature Poor_prognosis_gene na 7204 TRIO NM_007118.2
COL6A3 signature Poor_prognosis_gene ECM protein (network-forming collagen) 1293 COL6A3 NM_057167.3
ABLIM1 signature Poor_prognosis_gene na 3983 ABLIM1 NM_002313.5
ITGA9 signature Poor_prognosis_gene Myofibroblast regulation (integrin) 3680 ITGA9 NM_002207.2
NTS signature Poor_prognosis_gene na 4922 NTS NM_006183.4
SERPINB2 signature Poor_prognosis_gene na 5055 SERPINB2 NM_002575.2
MMP7 signature Poor_prognosis_gene ECM remodeling 4316 MMP7 NM_002423.3
PRKG2 signature Poor_prognosis_gene na 5593 PRKG2 NM_006259.1
EDG4 signature Poor_prognosis_gene Myofibroblast regulation (ATX/LPAR) 9170 LPAR2 NM_004720.5
NOS2A signature Poor_prognosis_gene na 4843 NOS2A NM_000625.4
EPHA4 signature Poor_prognosis_gene na 2043 EPHA4 NM_004438.3
SP100 signature Poor_prognosis_gene na 6672 SP100 NM_003113.3
FMO1 signature Poor_prognosis_gene na 2326 FMO1 NM_002021.1
GPX2 signature Poor_prognosis_gene na 2877 GPX2 NM_002083.2
ATP4B signature Poor_prognosis_gene na 496 ATP4B NM_000705.3

Total number of rows: 216

Table truncated, full table size 13 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap