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Platform GPL2572 Query DataSets for GPL2572
Status Public on Jul 01, 2005
Title SAM2.0
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Zea mays
Manufacturer Schnable Laboratory at Iowa State University(ISU)
Manufacture protocol The ISU microarray facility has generated a maize gene chip that contains 14,080 spotted cDNA inserts.
 
 
Contributor(s) Schnable PS
Submission date Jun 26, 2005
Last update date Mar 31, 2006
Contact name Patrick S. Schnable
E-mail(s) [email protected]
Phone 515-294-0975
Organization name Iowa State University
Street address 2035B Roy J Carver Co-Lab
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Samples (42) GSM88730, GSM88731, GSM88732, GSM88733, GSM88734, GSM88735 
Series (4)
GSE4004 Global gene expression in the maize shoot apical meristem
GSE6267 A global gene expression analysis in the shoot apical meristem of maize (Zea mays L.)
GSE7248 Transcriptome analyses of narrow sheath shoot apical meristem (SAM) vs non-mutant SAM

Data table header descriptions
ID
field Name of a field where the spot is located. In this chip there were two fields named A and B, they described the upper and lower part(location) of the chip
meta_row The number of rows of subgrids
meta_column The number of columns of subgrids
row The number of rows of spots contained within the grid
column The number of columns of spots contained within the grid
ref Plate source refer information of spots
GB_ACC GeneBank Accession Number of spots
GB_LIST List of GenBank Accession Numbers if a spot is associated with more than one number
SPOT_ID Identify the feature of spots without GB_ACC
SPOT_INFO Specifies spot category - Maize Gene, Maize Control Gene, Exogenous (Human Control Gene), No Sequence (Sequence not obtained while resequencing the spot), Unspecified (Suspected cross contamination), Empty (The original source plate well was empty or added to chip to fill the matrix), BadPCR (Anything that didn't have one distinct band, e.g. no band, multiple bands, smears) and 50% DMSO (Printing Buffer, No DNA)

Data table
ID field meta_row meta_column row column ref GB_ACC GB_LIST SPOT_ID SPOT_INFO
1 A 1 1 1 1 IUG45_RS-i-13-NoSeq(AW258123) No Sequence No Sequence
2 A 1 1 1 2 IUG45_RS-a-13-unspecified(AW231540) Unspecified Unspecified
3 A 1 1 1 3 IUG45_RS-i-9-DV942846 DV942846 Maize Gene
4 A 1 1 1 4 IUG45_RS-a-9-unspecified(AW257979) Unspecified Unspecified
5 A 1 1 1 5 IUG45_RS-i-5-BadPCR(AW231521) AW231521 BadPCR
6 A 1 1 1 6 IUG45_RS-a-5-DV942708 DV942708 Maize Gene
7 A 1 1 1 7 IUG45_RS-i-1-unspecified(AW257980) Unspecified Unspecified
8 A 1 1 1 8 IUG45_RS-a-1-unspecified(AW258032) Unspecified Unspecified
9 A 1 1 1 9 IUG44_RS-i-21-DY576279 DY576279 Maize Gene
10 A 1 1 1 10 IUG44_RS-a-21-NoSeq(AW231737) No Sequence No Sequence
11 A 1 1 1 11 IUG44_RS-i-17-NoSeq(AW191426) No Sequence No Sequence
12 A 1 1 1 12 IUG44_RS-a-17-NoSeq(AW181210) No Sequence No Sequence
13 A 1 1 1 13 IUG44_RS-i-13-NoSeq(AW331306) No Sequence No Sequence
14 A 1 1 1 14 IUG44_RS-a-13-NoSeq(AW225012) No Sequence No Sequence
15 A 1 1 1 15 IUG44_RS-i-9-DV943332 DV943332 Maize Gene
16 A 1 1 1 16 IUG44_RS-a-9-unspecified(AW231706) Unspecified Unspecified
17 A 1 1 1 17 IUG44_RS-i-5-NoSeq(AW231788) No Sequence No Sequence
18 A 1 1 1 18 IUG44_RS-a-5-DV942381 DV942381 Maize Gene
19 A 1 1 1 19 IUG44_RS-i-1-unspecified(AW225060) Unspecified Unspecified
20 A 1 1 1 20 IUG44_RS-a-1-NoSeq(AW181183) No Sequence No Sequence

Total number of rows: 14080

Table truncated, full table size 913 Kbytes.






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