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Platform GPL21477 Query DataSets for GPL21477
Status Public on Jan 01, 2017
Title Agilent-063615 P. gingivalis 8x15K v1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Porphyromonas gingivalis
Manufacturer Hokkaido System Science Co., Ltd. (Agilent eArray)
Manufacture protocol see manufacturer's web site
 
 
Submission date Feb 18, 2016
Last update date Jan 01, 2017
Contact name Kazuyuki Ishihara
Organization name Tokyo Dental College
Department Microbiolgy
Street address Misakicho 2-1-14
City Chiyoda-ku
State/province Tokyo
ZIP/Postal code 101-0061
Country Japan
 
Samples (4) GSM2065599, GSM2065600, GSM2065601, GSM2065602
Series (1)
GSE78048 Role of an extracytoplasmic function sigma factor, PGN_0319, in hemin utilization by Porphyromonas gingivalis

Data table header descriptions
ID
Row Raw number
Col Column number
SubTypeMask eArray SubTypeMask flag
SubTypeName eArray SubTypeName flag
SEQUENCE Probe sequence information
ProbeUID Unique probe identification
ProbeName
GeneName
SystematicName
Gene
ORF ORF Name
Synonym
COG COG database ID
Product Gene description
ControlType Control probe information
SPOT_ID

Data table
ID Row Col SubTypeMask SubTypeName SEQUENCE ProbeUID ProbeName GeneName SystematicName Gene ORF Synonym COG Product ControlType SPOT_ID
1 1 1 260 BrightCorner 0 GE_BrightCorner GE_BrightCorner GE_BrightCorner 1 GE_BrightCorner
2 1 2 66 Structural 1 DarkCorner DarkCorner DarkCorner 1 DarkCorner
3 1 3 66 Structural 1 DarkCorner DarkCorner DarkCorner 1 DarkCorner
4 1 4 0 ACTTTCTGGAAAATATCACTCCGCCCGAAGAGTATGAGATACTCGAAATGCAACGCATTT 3 Porph830 Porph830 Porph830 hslR PGN_0277 PGN_0277 COG1188J heat shock protein 15 0
5 1 5 0 GAGCATAATGAAGTACGATTATCTCTGCCGGAAATAAAGCCCGGACAGTTTGTTCAGGTA 5 Porph2698 Porph2698 Porph2698 PGN_0906 PGN_0906 COG0543HC dihydroorotate dehydrogenase electron transfer subunit 0
6 1 6 0 CGCAATTTATTGAGCATGAAGGCAGAAATACACAATCGAACCATCTCCGAAATACTGGCA 7 Porph5939 Porph5939 Porph5939 PGN_2034 PGN_2034 COG0794M sugar isomerase 0
7 1 7 0 CAATAGCGATCTGCGCGTATTCATGCACCATATATACGAGTTTGAAAAAGGTGTGCGAAG 9 Porph5253 Porph5253 Porph5253 PGN_1790 PGN_1790 - hypothetical protein 0
8 1 8 0 CCGAAGTGGTATTCGTCATTCGTCAATTCTATGATGAGTATGTGGAGGAAGTACGCAAGC 11 Porph4025 Porph4025 Porph4025 PGN_1372 PGN_1372 COG2846D hypothetical protein 0
9 1 9 0 GTGAGCGGTACTTTCTTACTCTTCACCAAAGCCAAAGAATATGGCAAAGACGGACTTTTG 13 Porph3512 Porph3512 Porph3512 PGN_1179 PGN_1179 COG0280C phosphotransacetylase 0
10 1 10 0 GAGACGGTCAATGGTCGAAAGAAACTGCTCTTTGATGGCTCCACAGTACGTAATAAAGAC 15 Porph173 Porph173 Porph173 PGN_0058 PGN_0058 - conjugate transposon protein 0
11 1 11 0 GTACTACTATAAATTCAAACGAGTGCTGCCGATGCGAAAAGTGATGGCTCTGAAAGTTGC 17 Porph3294 Porph3294 Porph3294 PGN_1106 PGN_1106 - hypothetical protein 0
12 1 12 0 CATACGATCCTTGTGTGCGGCTATCGGTAGCCTACAAAGGAGCCAAATCTCTGTTGATAA 19 Porph3774 Porph3774 Porph3774 PGN_1267 PGN_1267 COG0560E hypothetical protein 0
13 1 13 0 CATCAGCAGACAAATACGATCCGGCGAAAACTATCTGCAGCTCTTCAAAGAAAAATACCC 21 Porph2812 Porph2812 Porph2812 PGN_0945 PGN_0945 COG1309K TetR family transcriptional regulator 0
14 1 14 0 TTCTTAACGGCTCATACTCCTTTCAAGTTCCTCGAATACCGAACCGACAAAGTCATCCTC 23 Porph671 Porph671 Porph671 PGN_0224 PGN_0224 COG0677M UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 0
15 1 15 0 ATAGGTAAAGAGTTGGCTAATATCGAGCGGTTCCGTGACATGGGAGTCTGCTATATTACG 25 Porph1242 Porph1242 Porph1242 PGN_0414 PGN_0414 COG2355E membrane-bound dipeptidase 0
16 1 16 0 CAGATCCGAGCTGACAAACAGTGCTGTAGTAGTGATGATTGCTTCCTTAATCATTGCTCT 27 Porph4613 Porph4613 Porph4613 PGN_1577 PGN_1577 COG0690U preprotein translocase SecE subunit 0
17 1 17 0 CCTATCGGGCTTGGGGAGGGTATAAAAATGTTGTTTATTTGGAATCTGCAGTGGACTATT 29 Porph3709 Porph3709 Porph3709 PGN_1246 PGN_1246 COG5010U hypothetical protein 0
18 1 18 0 GAGTTGCAGCGGATTGCCGATGATCCGGAACTTTCCAAACTACTCAATACCAAGAAATAA 31 Porph226 Porph226 Porph226 PGN_0076 PGN_0076 COG3505U mobilization protein TraG family 0
19 1 19 0 ATTTCCCGTATCTTTGAGTATAGAAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAG 33 Porph4747 Porph4747 Porph4747 PGN_1622 PGN_1622 - hypothetical protein 0
20 1 20 0 TATTGCCATTGACCTGAATCATGAGTTGATAACTCACCCATACAGCACGTTCTACGGAAG 35 Porph3354 Porph3354 Porph3354 PGN_1126 PGN_1126 COG1974KT error-prone repair: SOS-response transcriptional repressor UmuD homolog 0

Total number of rows: 15744

Table truncated, full table size 2498 Kbytes.




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