 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Oct 23, 2015 |
| Title |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [Custom CDF: (Ath1121501_At_TAIRG.cdf v18.0.0] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
v18.0.0 Arabidopsis Custom CDF from http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF
|
| |
|
| |
|
| Submission date |
Oct 23, 2015 |
| Last update date |
Jan 19, 2016 |
| Contact name |
GEO admin |
| E-mail(s) |
[email protected]
|
| Organization name |
NCBI/NLM/NIH
|
| Street address |
9000 Rockville Pike
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Samples (100)
|
GSM2040468, GSM2040469, GSM2040470, GSM2040471, GSM2040472, GSM2040473
GSM2040474, GSM2040475, GSM2040476, GSM2040477, GSM2040478, GSM2040479, GSM2040480, GSM2040481, GSM2040482, GSM2040483, GSM2040484, GSM2040485, GSM2040486, GSM2040487, GSM2040488, GSM2040489, GSM2040490, GSM2040491, GSM2040492, GSM2040493, GSM2040494, GSM2040495, GSM2040496, GSM2040497, GSM2040498, GSM2040499, GSM2040500, GSM2040501, GSM2040502, GSM2040503, GSM2040504, GSM2040505, GSM2040506, GSM2040507, GSM2040508, GSM2040509, GSM2040510, GSM2040511, GSM2040512, GSM2040513, GSM2040514, GSM2040515, GSM2040516, GSM2040517, GSM2040518, GSM2040519, GSM2040520, GSM2040521, GSM2113630, GSM2113631, GSM2113632, GSM2113633, GSM2113634, GSM2113635, GSM2120744, GSM2120745, GSM2120746, GSM2120747, GSM2120748, GSM2120749, GSM2399933, GSM2399934, GSM2399935, GSM2399936, GSM2399937, GSM2399938, GSM2399939, GSM2399940, GSM2399941, GSM2399942, GSM2399943, GSM2399944, GSM2399945, GSM2399946, GSM2399947, GSM2399948, GSM2399949, GSM2399950, GSM2399951, GSM2399952, GSM2399953, GSM2399954, GSM2399955, GSM2399956, GSM2399957, GSM2399958, GSM2399959, GSM2399960, GSM2399961, GSM2399962, GSM2399963, GSM2399964, GSM2399965, GSM2399966
|
| Series (4)
|
| GSE76907 |
Dormant and after-ripened seeds are distinguished by early transcriptional differences in the imbibed state |
| GSE80158 |
Photorespiratory stress low CO2 conditions |
| GSE80200 |
Transcriptional responses in Arabidopsis seedlings after hydrogen peroxide treatment |
| GSE90162 |
The identification of novel genes involved in seed dormancy and after-ripening in Arabidopsis thaliana |
|
| Relations |
| Alternative to |
GPL198 (Alternative CDF [official]) |
| Data table header descriptions |
| ID |
Probe Set Name |
| ORF |
Locus tag |
| Description |
|
| Data table |
| ID |
ORF |
Description |
| AT1G01010_at |
AT1G01010 |
Symbols: ANAC001, NAC001 | NAC domain containing protein 1 | chr1:3631-5899 FORWARD LENGTH=1688 |
| AT1G01030_at |
AT1G01030 |
Symbols: NGA3 | AP2/B3-like transcriptional factor family protein | chr1:11649-13714 REVERSE LENGTH=1905 |
| AT1G01040_at |
AT1G01040 |
Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23146-31227 FORWARD LENGTH=6251 |
| AT1G01050_at |
AT1G01050 |
Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153 REVERSE LENGTH=976 |
| AT1G01060_at |
AT1G01060 |
Symbols: LHY | Homeodomain-like superfamily protein | chr1:33967-37871 REVERSE LENGTH=2722 |
| AT1G01070_at |
AT1G01070 |
Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:38752-40927 REVERSE LENGTH=1433 |
| AT1G01080_at |
AT1G01080 |
Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45296-47019 REVERSE LENGTH=1319 |
| AT1G01090_at |
AT1G01090 |
Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627 |
| AT1G01100_at |
AT1G01100 |
Symbols: | 60S acidic ribosomal protein family | chr1:50075-51199 REVERSE LENGTH=631 |
| AT1G01110_at |
AT1G01110 |
Symbols: IQD18 | IQ-domain 18 | chr1:52239-54692 FORWARD LENGTH=1782 |
| AT1G01120_at |
AT1G01120 |
Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167 REVERSE LENGTH=1899 |
| AT1G01130_at |
AT1G01130 |
Symbols: | CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:61905-63811 REVERSE LENGTH=375 |
| AT1G01140_at |
AT1G01140 |
Symbols: CIPK9, PKS6 | CBL-interacting protein kinase 9 | chr1:64167-67625 REVERSE LENGTH=1694 |
| AT1G01150_at |
AT1G01150 |
Symbols: | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr1:70115-72138 REVERSE LENGTH=1178 |
| AT1G01160_at |
AT1G01160 |
Symbols: GIF2 | GRF1-interacting factor 2 | chr1:72339-74096 FORWARD LENGTH=1045 |
| AT1G01170_at |
AT1G01170 |
Symbols: | Protein of unknown function (DUF1138) | chr1:73931-74731 REVERSE LENGTH=503 |
| AT1G01190_at |
AT1G01190 |
Symbols: CYP78A8 | cytochrome P450, family 78, subfamily A, polypeptide 8 | chr1:83045-84864 REVERSE LENGTH=1608 |
| AT1G01200_at |
AT1G01200 |
Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase homolog A3 | chr1:86515-88213 REVERSE LENGTH=982 |
| AT1G01220_at |
AT1G01220 |
Symbols: FKGP, AtFKGP | L-fucokinase/GDP-L-fucose pyrophosphorylase | chr1:91376-95651 FORWARD LENGTH=3532 |
| AT1G01225_at |
AT1G01225 |
Symbols: | NC domain-containing protein-related | chr1:95987-97407 FORWARD LENGTH=1025 |
Total number of rows: 21430
Table truncated, full table size 3196 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL21063_ATH1121501_At_TAIRG.cdf.gz |
5.5 Mb |
(ftp)(http) |
CDF |
| GPL21063_ATH1121501_At_TAIRG_desc.txt.gz |
704.1 Kb |
(ftp)(http) |
TXT |
| GPL21063_ATH1121501_At_TAIRG_mapping.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
| GPL21063_ATH1121501_At_TAIRG_probe_tab.txt.gz |
3.0 Mb |
(ftp)(http) |
TXT |
|
|
|
|
 |
Less...
More...