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Status
Public on Feb 09, 2011
Title
NimbleGen Leptosphaeria maculans whole genome 385K array v1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Plenodomus lingam Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
The Leptosphaeria maculans custom-exon array (385K) manufactured by Roche NimbleGen Systems Limited (Madison, WI) contains fourteen independent, non-identical, 60-mer probes per gene model, each being duplicated on the array. Included in the oligoarray are 12,396 predicted gene models, 63 genes encoding small secreted proteins not included in the predicted gene models, 1316 clustered EST that did not match with the gene models, 8651 random 60-mer control probes and labelling controls.
Submission date
Feb 08, 2011
Last update date
Feb 09, 2011
Contact name
Isabelle Fudal
E-mail(s)
[email protected] Phone
33-130814590
Organization name
INRA
Department
UR1290
Lab
BIOGER-CPP
Street address
avenue Lucien Bretignieres
City
Thiverval-Grignon
ZIP/Postal code
78850
Country
France
Samples (9)
GSM671240 , GSM671241 , GSM671242 , GSM671243 , GSM671244 , GSM671245
Series (1)
GSE27152 Leptosphaeria maculans gene expression during in vitro growth and primary oilseed rape leaf infection
Data table header descriptions ID SEQ_ID Gene accession assigned by NimbleGen
GB_ACC GenBank nucleotide accession
PT_ACC Protein accession in GenBank
BLOCK Number of replicate
GENE_INFO Information on the gene model
SPOT_ID
Data table ID SEQ_ID GB_ACC PT_ACC BLOCK GENE_INFO SPOT_ID 1
BG370028_Lm
BG370028 BLOCK1
BG370028
2
BG370028_Lm
BG370028 BLOCK2
BG370028
3
BG370037_Lm
BG370037 BLOCK1
BG370037
4
BG370037_Lm
BG370037 BLOCK2
BG370037
5
BG370109_Lm
BG370109 BLOCK1
BG370109
6
BG370109_Lm
BG370109 BLOCK2
BG370109
7
DT932846_Lm
DT932846 BLOCK1
DT932846
8
DT932846_Lm
DT932846 BLOCK2
DT932846
9
DT932856_Lm
DT932856 BLOCK1
DT932856
10
DT932856_Lm
DT932856 BLOCK2
DT932856
11
DT932860_Lm
DT932860 BLOCK1
DT932860
12
DT932860_Lm
DT932860 BLOCK2
DT932860
13
DT932868_Lm
DT932868 BLOCK1
DT932868
14
DT932868_Lm
DT932868 BLOCK2
DT932868
15
DT932934_Lm
DT932934 BLOCK1
DT932934
16
DT932934_Lm
DT932934 BLOCK2
DT932934
17
DT932948_Lm
DT932948 BLOCK1
DT932948
18
DT932948_Lm
DT932948 BLOCK2
DT932948
19
DT932985_Lm
DT932985 BLOCK1
DT932985
20
DT932985_Lm
DT932985 BLOCK2
DT932985
27558 2904 Kbytes .Supplementary file Size Download File type/resource GPL13139_090417_L_maculans_expr.ndf.gz
25.4 Mb
(ftp) (http) NDF
GPL13139_090417_L_maculans_expr.ngd.gz
195.3 Kb
(ftp) (http) NGD
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