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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 19, 2010 |
| Title |
Agilent Custom Human 244K CGH Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Agilent |
| Manufacture protocol |
in situ synthesized oligonucleotide array
|
| Support |
glass |
| Coating |
unknown |
| |
|
| Description |
Agilent Custom Human 244K CGH Microarray consisting of 60-mer oligonucleotides mapped to UCSC hg18 human genome (NCBI build 36).
Novel Sequence Array for Kidd et al 2010 AMADID 21331
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| |
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| Contributor(s) |
Kidd JM, Sampas N, Antonacci F, Graves T, Fulton R, Hayden HS, Alkan C, Malig M, Ventura M, Giannuzzi G, Kallicki J, Anderson P, Tsalenko A, Yamada N, Tsang P, Kaul R, Wilson RK, Bruhn L, Eichler EE |
| Submission date |
Mar 01, 2010 |
| Last update date |
Apr 19, 2010 |
| Contact name |
Nick Sampas |
| E-mail(s) |
[email protected]
|
| Organization name |
Agilent Technologies
|
| Department |
Life Science and Nanotechnology Department
|
| Lab |
Molecular Technology Laboratory
|
| Street address |
5301 Stevens Creek Blvd
|
| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
| |
|
| Samples (29)
|
GSM518151, GSM518152, GSM518153, GSM518154, GSM518155, GSM518156
GSM518157, GSM518158, GSM518159, GSM518160, GSM518161, GSM518162, GSM518163, GSM518164, GSM518165, GSM518166, GSM518167, GSM518168, GSM518169, GSM518170, GSM518171, GSM518172, GSM518173, GSM518174, GSM518175, GSM518176, GSM518177, GSM518178, GSM518179
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| Series (1) |
| GSE20634 |
Characterization of Missing Human Genome Sequences and Copy-number Polymorphic Insertions. |
|
| Data table header descriptions |
| ID |
|
| Col |
Column on micorarray |
| ControlType |
Array control feature type positive=1 negative=-1 |
| ProbeName |
Agilent ProbeID |
| ProbeUID |
Probe identifier unigue on each array |
| Row |
Row on micorarray |
| SEQUENCE |
Oligonucleotide sequence |
| SystematicName |
Location of probe within sequence |
| Chromosome |
|
| RANGE_GB |
GenBank Accession number |
| RANGE_START |
|
| RANGE_END |
|
| SPOT_ID |
|
| Data table |
| ID |
Col |
ControlType |
ProbeName |
ProbeUID |
Row |
SEQUENCE |
SystematicName |
Chromosome |
RANGE_GB |
RANGE_START |
RANGE_END |
SPOT_ID |
| 1 |
1 |
1 |
HsCGHBrightCorner |
0 |
1 |
_ |
HsCGHBrightCorner |
|
|
|
|
--HsCGHBrightCorner |
| 2 |
2 |
1 |
DarkCorner |
1 |
1 |
_ |
DarkCorner |
|
|
|
|
--DarkCorner |
| 3 |
3 |
1 |
DarkCorner |
1 |
1 |
_ |
DarkCorner |
|
|
|
|
--DarkCorner |
| 4 |
4 |
0 |
A_18_P16107904 |
3 |
1 |
CTGGTTGAGGTCCTCCCCTGAGGCTGTTAACCTGCAAGTGTTTCTATAACCGACGCCTAA |
chr7:057730778-057730822 |
chr7 |
NC_000007.12 |
57730778 |
57730838 |
|
| 5 |
5 |
0 |
A_18_P22815443 |
5 |
1 |
CCCCAGAGCAGAATGATACACCATGCGGAAAAGGTTTTCACATGTAGATAACCGACGCCT |
chr3:029783678-029783724 |
chr3 |
NC_000003.10 |
29783678 |
29783738 |
|
| 6 |
6 |
0 |
A_16_P34202537 |
7 |
1 |
ACTTAGTGGCTTAATTTAGGAAACATGTTAACAGGACACTATGTTTTTGAAATTGTAACA |
chr17:055380205-055380264 |
chr17 |
NC_000017.9 |
55380205 |
55380265 |
|
| 7 |
7 |
0 |
A_16_P17682306 |
9 |
1 |
AATAAGCCCTGTCACTTAAAATAGAACCCTCTACCTACAGATTATGTTTTCCTTTTGACC |
chr6:114170664-114170724 |
chr6 |
NC_000006.10 |
114170664 |
114170724 |
|
| 8 |
8 |
0 |
A_88_P00278121 |
11 |
1 |
GGAGGTGTGGGTTTTTTAAAAATCAATATACATCTCAAATACATTTCAGAAAGAAAGGTG |
chr11:116177462-116177521 |
chr11 |
NC_000011.8 |
116177462 |
116177522 |
|
| 9 |
9 |
0 |
A_18_P12635794 |
13 |
1 |
ATTAAAGAGAACACGCAACAAAGCCTTGGGACACTGGGAGGGGGATATAACCGACGCCTA |
chr17:031600081-031600036 |
chr17 |
NC_000017.9 |
31600081 |
31600141 |
|
| 10 |
10 |
0 |
A_18_P17412064 |
15 |
1 |
TGACAGATCCTCTACAAATACCACTTTTTCTTAAGCAGAACTATGTCAAAATGTGCTAGG |
chrY:023782815-023782756 |
chrY |
NC_000024.8 |
23782815 |
23782875 |
|
| 11 |
11 |
0 |
A_88_P00031296 |
17 |
1 |
TTTCTCTCCACACTGGTTTGCTTCAACAGGGCTAAGGGAGGTTTTATAACCGACGCCTAA |
freeze2_07029:000000619-000000663 |
|
|
|
|
freeze2_07029:000000619-000000663 |
| 12 |
12 |
0 |
A_88_P00193279 |
19 |
1 |
TAACTTATCCATACAGTCAAGTGCTTAATCGTCTCTTTGGTAGTAAGTCAGCACTTAGGA |
chr7:097241922-097241981 |
chr7 |
NC_000007.12 |
97241922 |
97241982 |
|
| 13 |
13 |
0 |
A_18_P17411733 |
21 |
1 |
CAAACATTAGAAAAATGGTCAAATAGAAGAACTGGTAATAGCCTTTTATCCCCTACGTGA |
chrY:023782572-023782513 |
chrY |
NC_000024.8 |
23782572 |
23782632 |
|
| 14 |
14 |
0 |
A_18_P17938804 |
23 |
1 |
GAATCATTAAGCAGTGCCAGACAGGACAAAAATACTAAAGATTGATTGAAGACAACAGCA |
chr1:179037360-179037419 |
chr1 |
NC_000001.9 |
179037360 |
179037420 |
|
| 15 |
15 |
0 |
A_18_P16837208 |
25 |
1 |
AACATGGAAGTCAGGAAAAGAGGAGGACAGTGTGGAGGCCACATCATAACCGACGCCTAA |
chr9:044829679-044829723 |
chr9 |
NC_000009.10 |
44829679 |
44829739 |
|
| 16 |
16 |
0 |
A_16_P18367649 |
27 |
1 |
GAACCATGTTTTTAACTCTTCCAAGTAACAGAGCATTTCCTAATACACTGCACCAAACAT |
chr8:080764263-080764323 |
chr8 |
NC_000008.9 |
80764263 |
80764323 |
|
| 17 |
17 |
0 |
A_88_P00274884 |
29 |
1 |
AGATGCCGTCCTGGCTCACTCGGCAGCCTTGGAACTGATTGGTTTATAACCGACGCCTAA |
freeze2_03304:000001255-000001299 |
|
|
|
|
freeze2_03304:000001255-000001299 |
| 18 |
18 |
0 |
A_16_P41274305 |
31 |
1 |
AGTTTGATGTATAAATACAGCCACATAAACAAGAAAAGGTAACTCTGTCACCTTATGTTT |
chr20:014727369-014727428 |
chr20 |
NC_000020.9 |
14727369 |
14727429 |
|
| 19 |
19 |
0 |
A_18_P14010385 |
33 |
1 |
TACACCAGACAGAACGGGGTCTCAATCCCTCCTGTGCTCTGCGTTATAACCGACGCCTAA |
chr22:040854298-040854342 |
chr22 |
NC_000022.9 |
40854298 |
40854358 |
|
| 20 |
20 |
0 |
A_88_P00125147 |
35 |
1 |
GACTTATAGTGGCTACCACCAATTCCCCATCCCCCACTGCTACACATAACCGACGCCTAA |
freeze2_34121:000000588-000000632 |
|
|
|
|
freeze2_34121:000000588-000000632 |
Total number of rows: 243504
Table truncated, full table size 38365 Kbytes.
| Supplementary data files not provided |
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