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Sample GSM518163 Query DataSets for GSM518163
Status Public on Apr 20, 2010
Title NA18573/NA15510
Sample type genomic
 
Channel 1
Source name NA18573
Organism Homo sapiens
Characteristics cell line: Coriell Lymphoblastoid
coriell sample: NA18573
population: CHB Female Fosmid library: ABC19
Biomaterial provider Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18573
Extracted molecule genomic DNA
Extraction protocol Performed by the Coriell Cell Repository
Label Cy5
Label protocol Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis ULS Labeling for Blood, Cells, Tissues or FFPE Protocol
 
Channel 2
Source name NA15510
Organism Homo sapiens
Characteristics cell line: Coriell Lymphoblastoid
coriell sample: NA15510
population: Unknown Female Fosmid library: G248
Biomaterial provider Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
Extracted molecule genomic DNA
Extraction protocol Performed by the Coriell Cell Repository
Label Cy3
Label protocol Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis ULS Labeling for Blood, Cells, Tissues or FFPE Protocol
 
 
Hybridization protocol Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis ULS Labeling for Blood, Cells, Tissues or FFPE Protocol
Scan protocol Scanned on an Agilent G2505A Scanner
Description NA18573/NA15510
Data processing Agilent Feature Extraction v9.1, default CGH parameters. This data represents probes not in the reference assembly (novel probe sequences). All filtering of novel probes begins with those 54,931 sequences represented in the Sample data tables.
 
Submission date Mar 04, 2010
Last update date Apr 29, 2010
Contact name Nick Sampas
E-mail(s) [email protected]
Organization name Agilent Technologies
Department Life Science and Nanotechnology Department
Lab Molecular Technology Laboratory
Street address 5301 Stevens Creek Blvd
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL10118
Series (1)
GSE20634 Characterization of Missing Human Genome Sequences and Copy-number Polymorphic Insertions.

Data table header descriptions
ID_REF
VALUE log(REDsignal/GREENsignal) per feature (processed signals used)
LogRatioError error of the log ratio calculated according to the error model chosen
samProcessedSignal processed signal of the sample channel
samProcessedSigError error of the sample processed signal calculated according to the error model chosen
refProcessedSignal processed signal of the reference channel
refProcessedSigError error of the reference processed signal calculated according to the error model chosen

Data table
ID_REF VALUE LogRatioError samProcessedSignal samProcessedSigError refProcessedSignal refProcessedSigError
11 -0.057461 0.062962 1048.573 109.208 1196.906 120.3767
17 -0.34071 0.069336 1181.545 121.9041 2589.1731 259.2252
20 -0.64438 0.085573 1351.722 138.4097 5960.2588 596.1578
22 0 0.19153 121.9099 30.8971 42.7695 12.4761
41 0 0.1957 110.8998 28.3534 38.3358 11.984
43 -0.52269 0.10055 108.2504 30.2453 360.6798 37.9924
44 0 0.19289 113.0839 28.9545 40.774 12.3621
45 -0.0038291 0.061667 2394.5959 241.1066 2415.802 241.8729
46 -0.025481 0.061492 6772.5571 677.8376 7181.8062 718.2787
55 -0.3882 0.071013 3582.5901 359.3231 8757.748 875.8529
67 0 0.17688 108.2371 27.8665 49.3854 12.5139
68 -0.11201 0.062816 1348.619 137.5543 1745.4 174.9173
76 0.095902 0.062328 2351.1289 236.6342 1885.272 188.8696
79 0.071087 0.062228 1793.677 181.3422 1522.8521 152.706
84 -0.070459 0.062527 1176.129 120.567 1383.2939 138.7873
89 -0.056343 0.06303 883.2972 92.1831 1005.657 101.1882
93 0.10477 0.063394 1119.947 115.032 879.8801 88.6932
96 -0.10255 0.063217 937.4848 97.3343 1187.172 119.2378
97 0.41766 0.077222 713.7835 76.0175 272.8382 29.4628
99 0.095279 0.066244 590.0458 64.5178 473.8123 48.6639

Total number of rows: 54931

Table truncated, full table size 3086 Kbytes.




Supplementary file Size Download File type/resource
GSM518163.txt.gz 27.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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