Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Plastid-lipid associated protein PAP / fibrillin family protein
Primary source: TAIR:AT5G09820
Locus tag: AT5G09820
See related: Araport:AT5G09820
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: MYH9.3; MYH9_3
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 6

Sequence:: Chromosome: 5; NC_003076.8 (3055618..3057578, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The study adds FBN5 as a structural component involved in the biosynthesis of plastoquinone-9 (PQ-9). FBN5 binding to the hydrophobic solanesyl moiety, which is generated by SPS1 and SPS2, in FBN5-B/SPS homodimeric complexes stimulates the enzyme activity of SPS1 and SPS2.
Title: Fibrillin 5 Is Essential for Plastoquinone-9 Biosynthesis by Binding to Solanesyl Diphosphate Synthases in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001036785.3

Supported by ESTs:

NM_001343070.1

Supported by ESTs:

NM_121019.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
acts_upstream_of_or_within plastoquinone biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast stroma	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Plastid-lipid associated protein PAP / fibrillin family protein

NP_001031862.1

Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 405 Blast hits to 405 proteins in 80 species: Archae - 0; Bacteria - 95; Metazoa - 0; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NP_196544.3

Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: fibrillin (TAIR:AT4G04020.1); Has 304 Blast hits to 304 proteins in 73 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

3055618..3057578 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001036785.3 → NP_001031862.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001031862.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4KFC4, Q5M755, Q9FIC4

UniProtKB/TrEMBL

A0A654FZR1

Conserved Domains (1) summary

pfam04755
Location:87 → 267

PAP_fibrillin
NM_121019.5 → NP_196544.3 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_196544.3

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UQJ9

Conserved Domains (1) summary

pfam04755
Location:87 → 226

PAP_fibrillin; PAP_fibrillin
NM_001343070.1 → NP_001330170.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UML7, A0A1P8B9Y9, A0A7G2F6B2