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Conserved domains on  [gi|42567755|ref|NP_196544|]
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Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

Protein Classification

PAP/fibrillin family protein( domain architecture ID 3762)

PAP/fibrillin family protein similar to chloroplastic plastid lipid-associated proteins (PAPs) and fibrillins, which are are nuclear-encoded, plastid proteins associated with chromoplast fibrils and chloroplast plastoglobules, thylakoids, photosynthetic antenna complexes, and stroma

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PAP_fibrillin super family cl04725
PAP_fibrillin; This family identifies a conserved region found in a number of plastid ...
 87-226 2.33e-20

PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.


The actual alignment was detected with superfamily member pfam04755:

Pssm-ID: 309752  Cd Length: 196  Bit Score: 85.63  E-value: 2.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42567755    87 KEELYEALKGINRGiFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVL--GSKRTKLGlrdFVSL 164
Cdd:pfam04755   4 KRKLLDAIYGTNRG-LRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTSKELlpLLARGRLP---LLKV 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42567755   165 GDLLQQIDIAQGKTVHVLKFdvrGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLMN 226
Cdd:pfam04755  80 GQIYQTIDVNNLTVYNSVTF---SGPLAEGSFSVRAKFEIRSPKRVQIRFERGVLGTPQLLK 138
 
Name Accession Description Interval E-value
PAP_fibrillin pfam04755
PAP_fibrillin; This family identifies a conserved region found in a number of plastid ...
 87-226 2.33e-20

PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.


Pssm-ID: 309752  Cd Length: 196  Bit Score: 85.63  E-value: 2.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42567755    87 KEELYEALKGINRGiFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVL--GSKRTKLGlrdFVSL 164
Cdd:pfam04755   4 KRKLLDAIYGTNRG-LRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTSKELlpLLARGRLP---LLKV 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42567755   165 GDLLQQIDIAQGKTVHVLKFdvrGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLMN 226
Cdd:pfam04755  80 GQIYQTIDVNNLTVYNSVTF---SGPLAEGSFSVRAKFEIRSPKRVQIRFERGVLGTPQLLK 138
 
Name Accession Description Interval E-value
PAP_fibrillin pfam04755
PAP_fibrillin; This family identifies a conserved region found in a number of plastid ...
 87-226 2.33e-20

PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.


Pssm-ID: 309752  Cd Length: 196  Bit Score: 85.63  E-value: 2.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42567755    87 KEELYEALKGINRGiFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVL--GSKRTKLGlrdFVSL 164
Cdd:pfam04755   4 KRKLLDAIYGTNRG-LRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTSKELlpLLARGRLP---LLKV 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42567755   165 GDLLQQIDIAQGKTVHVLKFdvrGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLMN 226
Cdd:pfam04755  80 GQIYQTIDVNNLTVYNSVTF---SGPLAEGSFSVRAKFEIRSPKRVQIRFERGVLGTPQLLK 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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