NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|79327456|ref|NP_001031862|]
View 

Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

Protein Classification

PAP/fibrillin family protein( domain architecture ID 3762)

PAP/fibrillin family protein similar to chloroplastic plastid lipid-associated proteins (PAPs) and fibrillins, which are are nuclear-encoded, plastid proteins associated with chromoplast fibrils and chloroplast plastoglobules, thylakoids, photosynthetic antenna complexes, and stroma

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PAP_fibrillin super family cl04725
PAP_fibrillin; This family identifies a conserved region found in a number of plastid ...
 87-267 7.43e-30

PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.


The actual alignment was detected with superfamily member pfam04755:

Pssm-ID: 309752  Cd Length: 196  Bit Score: 111.05  E-value: 7.43e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79327456    87 KEELYEALKGINRGiFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVL--GSKRTKLGlrdFVSL 164
Cdd:pfam04755   4 KRKLLDAIYGTNRG-LRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTSKELlpLLARGRLP---LLKV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79327456   165 GDLLQQIDIAQGKTVHVLKFdvrGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLM------------NIFRKNM 232
Cdd:pfam04755  80 GQIYQTIDVNNLTVYNSVTF---SGPLAEGSFSVRAKFEIRSPKRVQIRFERGVLGTPQLLkgsltplqdtasNIRGISS 156

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 79327456   233 DLLLGIFNP----EGLFEISYLDEDLQVGRDGKGNVFVL 267
Cdd:pfam04755 157 QLPLPFPLSgdraKGWLETTYLDEDLRISRGDGGSLFVL 195
 
Name Accession Description Interval E-value
PAP_fibrillin pfam04755
PAP_fibrillin; This family identifies a conserved region found in a number of plastid ...
 87-267 7.43e-30

PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.


Pssm-ID: 309752  Cd Length: 196  Bit Score: 111.05  E-value: 7.43e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79327456    87 KEELYEALKGINRGiFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVL--GSKRTKLGlrdFVSL 164
Cdd:pfam04755   4 KRKLLDAIYGTNRG-LRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTSKELlpLLARGRLP---LLKV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79327456   165 GDLLQQIDIAQGKTVHVLKFdvrGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLM------------NIFRKNM 232
Cdd:pfam04755  80 GQIYQTIDVNNLTVYNSVTF---SGPLAEGSFSVRAKFEIRSPKRVQIRFERGVLGTPQLLkgsltplqdtasNIRGISS 156

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 79327456   233 DLLLGIFNP----EGLFEISYLDEDLQVGRDGKGNVFVL 267
Cdd:pfam04755 157 QLPLPFPLSgdraKGWLETTYLDEDLRISRGDGGSLFVL 195
 
Name Accession Description Interval E-value
PAP_fibrillin pfam04755
PAP_fibrillin; This family identifies a conserved region found in a number of plastid ...
 87-267 7.43e-30

PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.


Pssm-ID: 309752  Cd Length: 196  Bit Score: 111.05  E-value: 7.43e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79327456    87 KEELYEALKGINRGiFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVL--GSKRTKLGlrdFVSL 164
Cdd:pfam04755   4 KRKLLDAIYGTNRG-LRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTSKELlpLLARGRLP---LLKV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79327456   165 GDLLQQIDIAQGKTVHVLKFdvrGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLM------------NIFRKNM 232
Cdd:pfam04755  80 GQIYQTIDVNNLTVYNSVTF---SGPLAEGSFSVRAKFEIRSPKRVQIRFERGVLGTPQLLkgsltplqdtasNIRGISS 156

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 79327456   233 DLLLGIFNP----EGLFEISYLDEDLQVGRDGKGNVFVL 267
Cdd:pfam04755 157 QLPLPFPLSgdraKGWLETTYLDEDLRISRGDGGSLFVL 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH