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    Protein with RING/U-box and TRAF-like domain [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825352, updated on 18-Sep-2024

    Summary

    Official Full Name
    Protein with RING/U-box and TRAF-like domain
    Primary source
    TAIR:AT3G61790
    Locus tag
    AT3G61790
    See related
    Araport:AT3G61790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21F14.2
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (22871697..22873833, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein Neighboring gene embryo defective 1703 Neighboring gene ENTH/VHS protein Neighboring gene Glycosyl hydrolase family 17 protein Neighboring gene Eukaryotic aspartyl protease family protein

    Interactions

    General gene information

    NM_116044.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding PubMed 
    enables zinc ion binding  
    Component Evidence Code Pubs
    located_in endomembrane system PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    Protein with RING/U-box and TRAF-like domain
    NP_567118.1
    • Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT4G27880.1); Has 1836 Blast hits to 1817 proteins in 706 species: Archae - 0; Bacteria - 0; Metazoa - 1264; Fungi - 11; Plants - 486; Viruses - 2; Other Eukaryotes - 73 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22871697..22873833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116044.4 → NP_567118.1  Protein with RING/U-box and TRAF-like domain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567118.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84JL3, Q8LFQ3, Q9M359
      UniProtKB/TrEMBL
      A0A178V9V8, A0A5S9XNK7
      Conserved Domains (2) summary
      cd16571
      Location:61 → 99
      RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
      pfam03145
      Location:105 → 304
      Sina; Seven in absentia protein family
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