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hypothetical protein (DUF3133) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837155, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF3133)
Primary source
TAIR:AT1G01440
Locus tag
AT1G01440
See related
Araport:AT1G01440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6F3.24; F6F3_24
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (159628..162953, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UDP-glucosyl transferase 72B3 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 25 Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene late embryogenesis abundant hydroxyproline-rich glycoprotein family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_100026.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of defense response to fungus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF3133)
NP_171651.1
  • Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT4G01090.1); Has 702 Blast hits to 662 proteins in 107 species: Archae - 0; Bacteria - 15; Metazoa - 235; Fungi - 59; Plants - 328; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    159628..162953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100026.3 → NP_171651.1  hypothetical protein (DUF3133) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171651.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W949, A0A5S9S1F7, Q6NQ63
    Conserved Domains (1) summary
    pfam11331
    Location:275 → 319
    zinc_ribbon_12; Probable zinc-ribbon domain
Nucleotide Protein
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