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oxidoreductase, 2OG-Fe(II) oxygenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828132, updated on 18-Sep-2024

Summary

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Official Full Name
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Primary source
TAIR:AT4G02940
Locus tag
AT4G02940
See related
Araport:AT4G02940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4I9.18; T4I9_18
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (1306313..1311038)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene ncRNA Neighboring gene Ubiquitin family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ALKBH10B Is an RNA N(6)-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition. Duan HC, et al. Plant Cell, 2017 Dec. PMID 29180595, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ALKBH10B is a demethylase that oxidatively reverses m(6)A methylation in mRNA in vitro and in vivo.[ALKBH10B]
    Title: ALKBH10B Is an RNA N(6)-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_116528.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables demethylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA N6-methyladenosine dioxygenase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables mRNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within oxidative RNA demethylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
oxidoreductase, 2OG-Fe(II) oxygenase family protein
NP_192203.1
  • oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G48080.1); Has 217 Blast hits to 213 proteins in 52 species: Archae - 0; Bacteria - 14; Metazoa - 24; Fungi - 16; Plants - 131; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1306313..1311038
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116528.6 → NP_192203.1  oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192203.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZT92
    UniProtKB/TrEMBL
    A0A178V1C0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZT92.1

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