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    NPGR2 no pollen germination related 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828978, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NPGR2
    Official Full Name
    no pollen germination related 2
    Primary source
    TAIR:AT4G28600
    Locus tag
    AT4G28600
    See related
    Araport:AT4G28600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    no pollen germination related 2; T5F17.50; T5F17_50
    Summary
    encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
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    Genomic context

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    See NPGR2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (14129180..14132869)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene magnesium transport 5 Neighboring gene polyadenylate-binding protein 2-binding protein Neighboring gene phosphate starvation response 1 Neighboring gene ABC transporter of the mitochondrion 2 Neighboring gene ABC transporter of the mitochondrion 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A calmodulin-binding protein from Arabidopsis has an essential role in pollen germination. Golovkin M, et al. Proc Natl Acad Sci U S A, 2003 Sep 2. PMID 12928497, Free PMC Article
    2. A nanodomain-anchored scaffolding complex is required for the function and localization of phosphatidylinositol 4-kinase alpha in plants. Noack LC, et al. Plant Cell, 2022 Jan 20. PMID 34010411, Free PMC Article
    3. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119002.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane microdomain IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    is_active_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    no pollen germination related 2
    NP_194589.2
    • no pollen germination related 2 (NPGR2); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2060 Blast hits to 1763 proteins in 357 species: Archae - 278; Bacteria - 547; Metazoa - 329; Fungi - 78; Plants - 247; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14129180..14132869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341925.1 → NP_001329155.1  no pollen germination related 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q66GN3, Q9M0H1
      UniProtKB/TrEMBL
      A0A178V549, A0A654FTN1
      Conserved Domains (2) summary
      COG0457
      Location:470 → 659
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:629 → 654
      TPR; TPR repeat [structural motif]

    2. NM_001341926.1 → NP_001329156.1  no pollen germination related 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6U4, A0A654FTN1
      Conserved Domains (2) summary
      COG0457
      Location:464 → 664
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:634 → 659
      TPR; TPR repeat [structural motif]

    3. NM_119002.6 → NP_194589.2  no pollen germination related 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194589.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q66GN3, Q9M0H1
      UniProtKB/TrEMBL
      A0A178V549, A0A654FTN1
      Conserved Domains (2) summary
      COG0457
      Location:470 → 659
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:629 → 654
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66GN3.1

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