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    Uncharacterized protein family (UPF0172) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835236, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Uncharacterized protein family (UPF0172)
    Primary source
    TAIR:AT5G51620
    Locus tag
    AT5G51620
    See related
    Araport:AT5G51620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K17N15.17; K17N15_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (20967034..20968506)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Microtubule associated protein (MAP65/ASE1) family protein Neighboring gene Ribosomal protein L11 family protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Alternative splicing affects the targeting sequence of peroxisome proteins in Arabidopsis. An C, et al. Plant Cell Rep, 2017 Jul. PMID 28352967
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085275.2
    NM_001344943.1
    NM_001344944.1
    NM_001344945.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of EMC complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Uncharacterized protein family (UPF0172)
    NP_001078744.1
    • Uncharacterised protein family (UPF0172); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G55940.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_001318779.1
    • Uncharacterised protein family (UPF0172); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G55940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001318780.1
    • Uncharacterised protein family (UPF0172); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G55940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20967034..20968506
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344943.1 → NP_001318780.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3E8D1

    2. NM_001344945.1 → NP_001331959.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFG8, A0A654GAI6
      Conserved Domains (1) summary
      cl13996
      Location:1 → 51
      MPN; Mpr1p, Pad1p N-terminal (MPN) domains

    3. NM_001085275.2 → NP_001078744.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078744.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQZ2
      Conserved Domains (1) summary
      cl13996
      Location:1 → 50
      MPN; Mpr1p, Pad1p N-terminal (MPN) domains

    4. NM_001344944.1 → NP_001318779.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KDB4
    Nucleotide Protein
    Heading Accession and Version

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