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Uncharacterized protein family (UPF0172) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835236, updated on 18-Sep-2024

Summary

Official Full Name
Uncharacterized protein family (UPF0172)
Primary source
TAIR:AT5G51620
Locus tag
AT5G51620
See related
Araport:AT5G51620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K17N15.17; K17N15_17
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Genomic context

Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (20967034..20968506)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Microtubule associated protein (MAP65/ASE1) family protein Neighboring gene Ribosomal protein L11 family protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene uncharacterized protein

General gene information

NM_001085275.2
NM_001344943.1
NM_001344944.1
NM_001344945.1

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
part_of EMC complex  
located_in nucleus  
NOT located_in peroxisome PubMed 
located_in peroxisome PubMed 

General protein information

Preferred Names
Uncharacterized protein family (UPF0172)
NP_001078744.1
  • Uncharacterised protein family (UPF0172); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G55940.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_001318779.1
  • Uncharacterised protein family (UPF0172); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G55940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001318780.1
  • Uncharacterised protein family (UPF0172); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G55940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20967034..20968506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344943.1NP_001318780.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3E8D1
  2. NM_001344945.1NP_001331959.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFG8, A0A654GAI6
    Conserved Domains (1) summary
    cl13996
    Location:151
    MPN; Mpr1p, Pad1p N-terminal (MPN) domains
  3. NM_001085275.2NP_001078744.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078744.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MQZ2
    Conserved Domains (1) summary
    cl13996
    Location:150
    MPN; Mpr1p, Pad1p N-terminal (MPN) domains
  4. NM_001344944.1NP_001318779.1  Uncharacterized protein family (UPF0172) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KDB4
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