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    binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827271, updated on 18-Sep-2024

    Summary

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    Official Full Name
    binding protein
    Primary source
    TAIR:AT4G15890
    Locus tag
    AT4G15890
    See related
    Araport:AT4G15890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3985W; FCAALL.407
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (9017256..9023026)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cysteine proteinases superfamily protein Neighboring gene kinesin motor protein-like protein Neighboring gene pleiotropic regulatory locus 1 Neighboring gene drought-induced 21

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant condensin II is required for the correct spatial relationship between centromeres and rDNA arrays. Sakamoto T, et al. Nucleus, 2019 Dec. PMID 31092096, Free PMC Article
    2. The PHD Finger Protein MMD1/DUET Ensures the Progression of Male Meiotic Chromosome Condensation and Directly Regulates the Expression of the Condensin Gene CAP-D3. Wang J, et al. Plant Cell, 2016 Aug. PMID 27385818, Free PMC Article
    3. The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility. Schubert V, et al. Chromosoma, 2013 Dec. PMID 23929493
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CAP-D3 is required for plant vigour, fertility, chromatin condensation and sister chromatid cohesion
      Title: The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001341078.1
    NM_117681.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within centromere clustering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in chromatin organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in chromosome condensation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within meiotic chromosome condensation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within microsporogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sister chromatid cohesion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of condensin complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in euchromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    binding protein
    NP_193324.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome condensation protein, HCP-6-related (InterPro:IPR012371), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G57060.1); Has 443 Blast hits to 428 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 128; Plants - 61; Viruses - 3; Other Eukaryotes - 63 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9017256..9023026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117681.3 → NP_193324.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193324.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23639, O24610, Q7DLS9
      UniProtKB/TrEMBL
      A0A654FPR9
      Conserved Domains (1) summary
      pfam12717
      Location:897 → 1101
      Cnd1; non-SMC mitotic condensation complex subunit 1

    2. NM_001341078.1 → NP_001329429.1  binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7R3, A0A654FPR9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24610.2

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