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Conserved domains on  [gi|15234750|ref|NP_193324|]
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binding protein [Arabidopsis thaliana]

Protein Classification

Cnd1 domain-containing protein( domain architecture ID 11196605)

Cnd1 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Cnd1 pfam12717
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ...
899-1009 2.80e-17

non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.


:

Pssm-ID: 463677 [Multi-domain]  Cd Length: 162  Bit Score: 80.58  E-value: 2.80e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234750    899 ALRNNLVVAMTdfCVHYTAMIECYIPKITKRLRDPCEVVRRQTFILLSRLLQRDYVKWRGVLFlRFLLSLVDESEKIRRL 978
Cdd:pfam12717    1 LIRALAIRTMG--CIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVKGFIS-ELAKLLEDPNPMVVAN 77
                           90       100       110
                   ....*....|....*....|....*....|.
gi 15234750    979 ADFLFGSILKvKAPLLAYNSFVEAIYVLNDC 1009
Cdd:pfam12717   78 ALAALTEISE-KDPNAIYNLLPDIISKLSDA 107
 
Name Accession Description Interval E-value
Cnd1 pfam12717
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ...
899-1009 2.80e-17

non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.


Pssm-ID: 463677 [Multi-domain]  Cd Length: 162  Bit Score: 80.58  E-value: 2.80e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234750    899 ALRNNLVVAMTdfCVHYTAMIECYIPKITKRLRDPCEVVRRQTFILLSRLLQRDYVKWRGVLFlRFLLSLVDESEKIRRL 978
Cdd:pfam12717    1 LIRALAIRTMG--CIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVKGFIS-ELAKLLEDPNPMVVAN 77
                           90       100       110
                   ....*....|....*....|....*....|.
gi 15234750    979 ADFLFGSILKvKAPLLAYNSFVEAIYVLNDC 1009
Cdd:pfam12717   78 ALAALTEISE-KDPNAIYNLLPDIISKLSDA 107
COG5098 COG5098
Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell ...
860-1006 2.16e-09

Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning];


Pssm-ID: 227429 [Multi-domain]  Cd Length: 1128  Bit Score: 62.31  E-value: 2.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234750  860 PLLYSQSWLTMAK-MCLADgKLAKRYLPLFAQELEKSDCAALRNNLVVAMTDFCVHYTAMIECYIPKITKRLRDPCEVVR 938
Cdd:COG5098  910 EELQVAAYLSLYKlMCLSF-EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVR 988
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15234750  939 RQTFILLSRLLQRDYVKWRGVLFlRFLLSLVDESEKIRRLADFLFGSILKVKAPLlaYNSFVEAIYVL 1006
Cdd:COG5098  989 RTCLMTIHFLILAGQLKVKGQLG-KMALLLTDEDAEISDMARHFFTQIAKKDNTM--YNGFIDIFSTL 1053
 
Name Accession Description Interval E-value
Cnd1 pfam12717
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ...
899-1009 2.80e-17

non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.


Pssm-ID: 463677 [Multi-domain]  Cd Length: 162  Bit Score: 80.58  E-value: 2.80e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234750    899 ALRNNLVVAMTdfCVHYTAMIECYIPKITKRLRDPCEVVRRQTFILLSRLLQRDYVKWRGVLFlRFLLSLVDESEKIRRL 978
Cdd:pfam12717    1 LIRALAIRTMG--CIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVKGFIS-ELAKLLEDPNPMVVAN 77
                           90       100       110
                   ....*....|....*....|....*....|.
gi 15234750    979 ADFLFGSILKvKAPLLAYNSFVEAIYVLNDC 1009
Cdd:pfam12717   78 ALAALTEISE-KDPNAIYNLLPDIISKLSDA 107
COG5098 COG5098
Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell ...
860-1006 2.16e-09

Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning];


Pssm-ID: 227429 [Multi-domain]  Cd Length: 1128  Bit Score: 62.31  E-value: 2.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234750  860 PLLYSQSWLTMAK-MCLADgKLAKRYLPLFAQELEKSDCAALRNNLVVAMTDFCVHYTAMIECYIPKITKRLRDPCEVVR 938
Cdd:COG5098  910 EELQVAAYLSLYKlMCLSF-EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVR 988
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15234750  939 RQTFILLSRLLQRDYVKWRGVLFlRFLLSLVDESEKIRRLADFLFGSILKVKAPLlaYNSFVEAIYVL 1006
Cdd:COG5098  989 RTCLMTIHFLILAGQLKVKGQLG-KMALLLTDEDAEISDMARHFFTQIAKKDNTM--YNGFIDIFSTL 1053
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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