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    Ribosomal protein L10 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820076, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L10 family protein
    Primary source
    TAIR:AT3G09200
    Locus tag
    AT3G09200
    See related
    Araport:AT3G09200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2823088..2825241, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Concanavalin A-like lectin family protein Neighboring gene plastid transcriptionally active 13 Neighboring gene laccase 7 Neighboring gene myb domain protein 1 Neighboring gene kinase with tetratricopeptide repeat domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Siodmak A, et al. Nucleic Acids Res, 2023 Nov 27. PMID 37823590, Free PMC Article
    2. Leaf proteome responses of Arabidopsis thaliana exposed to mild cadmium stress. Semane B, et al. J Plant Physiol, 2010 Mar 1. PMID 20005002
    3. Identification of zinc-responsive proteins in the roots of Arabidopsis thaliana using a highly improved method of two-dimensional electrophoresis. Fukao Y, et al. Plant Cell Physiol, 2009 Dec. PMID 19880396
    4. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    5. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084656.1
    NM_111754.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cadmium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to zinc ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L10 family protein
    NP_001078125.1
    • Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1417 Blast hits to 1416 proteins in 449 species: Archae - 322; Bacteria - 1; Metazoa - 456; Fungi - 192; Plants - 147; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).
    NP_187531.1
    • Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1610 Blast hits to 1607 proteins in 477 species: Archae - 322; Bacteria - 1; Metazoa - 504; Fungi - 287; Plants - 176; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2823088..2825241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111754.4 → NP_187531.1  Ribosomal protein L10 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187531.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42112, Q8LCI7, Q9SR42, Q9SS70
      UniProtKB/TrEMBL
      A0A178V4X3, A0A178VHF3, A0A5S9XAC9
      Conserved Domains (1) summary
      PTZ00135
      Location:1 → 277
      PTZ00135; 60S acidic ribosomal protein P0; Provisional

    2. NM_001084656.1 → NP_001078125.1  Ribosomal protein L10 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078125.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4X3, A8MQR4
      Conserved Domains (2) summary
      pfam00428
      Location:201 → 265
      Ribosomal_60s; 60s Acidic ribosomal protein
      cl00376
      Location:8 → 151
      Ribosomal_L10_P0; Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42112.2

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