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    myosin heavy chain, embryonic smooth protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837031, updated on 18-Sep-2024

    Summary

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    Official Full Name
    myosin heavy chain, embryonic smooth protein
    Primary source
    TAIR:AT1G05320
    Locus tag
    AT1G05320
    See related
    Araport:AT1G05320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    YUP8H12.6; YUP8H12_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (1553568..1557848)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene zinc transporter 5 precursor Neighboring gene Pectin lyase-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene cysteine-rich TM module stress tolerance protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035895.2
    NM_001035896.3
    NM_001331538.1
    NM_001331539.1
    NM_001331540.1
    NM_001331541.1
    NM_001331542.1
    NM_001331543.1
    NM_100411.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region HDA PubMed 

    General protein information

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    Preferred Names
    myosin heavy chain, embryonic smooth protein
    NP_001030972.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706; Bacteria - 62589; Metazoa - 106546; Fungi - 19914; Plants - 13918; Viruses - 1287; Other Eukaryotes - 59690 (source: NCBI BLink).
    NP_001030973.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267444 Blast hits to 119656 proteins in 3886 species: Archae - 3699; Bacteria - 62432; Metazoa - 106542; Fungi - 19875; Plants - 13918; Viruses - 1288; Other Eukaryotes - 59690 (source: NCBI BLink).
    NP_172024.3
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706; Bacteria - 62589; Metazoa - 106546; Fungi - 19914; Plants - 13918; Viruses - 1287; Other Eukaryotes - 59690 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1553568..1557848
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100411.4 → NP_172024.3  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172024.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7F9, F4I8Q1
      Conserved Domains (3) summary
      COG1196
      Location:101 → 763
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:538 → 574
      CASP_C; CASP C terminal
      pfam15112
      Location:184 → 322
      DUF4559; Domain of unknown function (DUF4559)

    2. NM_001035896.3 → NP_001030973.2  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030973.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7F9, F4I8Q1
      Conserved Domains (3) summary
      COG1196
      Location:101 → 763
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:538 → 574
      CASP_C; CASP C terminal
      pfam15112
      Location:184 → 322
      DUF4559; Domain of unknown function (DUF4559)

    3. NM_001331538.1 → NP_001321443.1  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7F9, F4I8Q1
      Conserved Domains (3) summary
      COG1196
      Location:101 → 763
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:538 → 574
      CASP_C; CASP C terminal
      pfam15112
      Location:184 → 322
      DUF4559; Domain of unknown function (DUF4559)

    4. NM_001035895.2 → NP_001030972.2  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030972.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7F9, F4I8Q1
      Conserved Domains (3) summary
      COG1196
      Location:101 → 763
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:538 → 574
      CASP_C; CASP C terminal
      pfam15112
      Location:184 → 322
      DUF4559; Domain of unknown function (DUF4559)

    5. NM_001331539.1 → NP_001321444.1  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQX3, Q56WB1

    6. NM_001331540.1 → NP_001321441.1  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQX3, Q56WB1

    7. NM_001331541.1 → NP_001321442.1  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7F9, F4I8Q1
      Conserved Domains (3) summary
      COG1196
      Location:101 → 763
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:538 → 574
      CASP_C; CASP C terminal
      pfam15112
      Location:184 → 322
      DUF4559; Domain of unknown function (DUF4559)

    8. NM_001331542.1 → NP_001321439.1  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7F9, F4I8Q1
      Conserved Domains (3) summary
      COG1196
      Location:101 → 763
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:538 → 574
      CASP_C; CASP C terminal
      pfam15112
      Location:184 → 322
      DUF4559; Domain of unknown function (DUF4559)

    9. NM_001331543.1 → NP_001321440.1  myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7F9, F4I8Q1
      Conserved Domains (3) summary
      COG1196
      Location:101 → 763
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:538 → 574
      CASP_C; CASP C terminal
      pfam15112
      Location:184 → 322
      DUF4559; Domain of unknown function (DUF4559)
    Nucleotide Protein
    Heading Accession and Version

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