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Conserved domains on  [gi|1063680478|ref|NP_001321440|]
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myosin heavy chain, embryonic smooth protein [Arabidopsis thaliana]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000095)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
37-711 4.46e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 76.63  E-value: 4.46e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   37 FVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKELTEVKEAfdgLGLELENSRKKMIELEDRIRisalEAEKL 116
Cdd:TIGR02168  217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIE----ELQKE 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  117 EELQKQSASELEEKLKISDERyskTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEgkkssiqMQEYQEK 196
Cdd:TIGR02168  290 LYALANEISRLEQQKQILRER---LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE-------LESLEAE 359
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  197 VSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEAT 276
Cdd:TIGR02168  360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  277 LSVAMEKE--RDLSENLNAVMEKLKSSEERLEKQAREIDEAttrsiELEALHKHSELKVQKTM-EDFSSRDTEAKSLTEK 353
Cdd:TIGR02168  440 AELEELEEelEELQEELERLEEALEELREELEEAEQALDAA-----ERELAQLQARLDSLERLqENLEGFSEGVKALLKN 514
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  354 SKDLE-------EKIRV---YEGKLAEACGQSLSLQEELDQSSAENELLADTNNQL-KIKIQEL----EGYLDSEKETAI 418
Cdd:TIGR02168  515 QSGLSgilgvlsELISVdegYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELgRVTFLPLdsikGTEIQGNDREIL 594
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  419 EKLNQKDTEAKDLITKLKSHENVIEEHKRQVL----------------------------------------EASGVADT 458
Cdd:TIGR02168  595 KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalelakklrpgyrivtldgdlvrpggvitggsaKTNSSILE 674
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  459 RKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEkYQQAKELQITIEDLTKQLT 538
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLS 753
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  539 SERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKsksDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEV 618
Cdd:TIGR02168  754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK---EELKALREALDELRAELTLLNEEAANLRERLESLE 830
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  619 EKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKL 698
Cdd:TIGR02168  831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
                          730
                   ....*....|...
gi 1063680478  699 NELEQKVKLADAK 711
Cdd:TIGR02168  911 SELRRELEELREK 923
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
37-711 4.46e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 76.63  E-value: 4.46e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   37 FVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKELTEVKEAfdgLGLELENSRKKMIELEDRIRisalEAEKL 116
Cdd:TIGR02168  217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIE----ELQKE 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  117 EELQKQSASELEEKLKISDERyskTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEgkkssiqMQEYQEK 196
Cdd:TIGR02168  290 LYALANEISRLEQQKQILRER---LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE-------LESLEAE 359
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  197 VSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEAT 276
Cdd:TIGR02168  360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  277 LSVAMEKE--RDLSENLNAVMEKLKSSEERLEKQAREIDEAttrsiELEALHKHSELKVQKTM-EDFSSRDTEAKSLTEK 353
Cdd:TIGR02168  440 AELEELEEelEELQEELERLEEALEELREELEEAEQALDAA-----ERELAQLQARLDSLERLqENLEGFSEGVKALLKN 514
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  354 SKDLE-------EKIRV---YEGKLAEACGQSLSLQEELDQSSAENELLADTNNQL-KIKIQEL----EGYLDSEKETAI 418
Cdd:TIGR02168  515 QSGLSgilgvlsELISVdegYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELgRVTFLPLdsikGTEIQGNDREIL 594
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  419 EKLNQKDTEAKDLITKLKSHENVIEEHKRQVL----------------------------------------EASGVADT 458
Cdd:TIGR02168  595 KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalelakklrpgyrivtldgdlvrpggvitggsaKTNSSILE 674
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  459 RKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEkYQQAKELQITIEDLTKQLT 538
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLS 753
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  539 SERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKsksDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEV 618
Cdd:TIGR02168  754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK---EELKALREALDELRAELTLLNEEAANLRERLESLE 830
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  619 EKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKL 698
Cdd:TIGR02168  831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
                          730
                   ....*....|...
gi 1063680478  699 NELEQKVKLADAK 711
Cdd:TIGR02168  911 SELRRELEELREK 923
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
56-664 8.01e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 8.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  56 KAEKQLKSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAEKLEE----------LQKQSAS 125
Cdd:COG1196   219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELeleeaqaeeyELLAELA 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 126 ELEEKLKISDERYSKTDALLSQALSQNSVLEQKLkslEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLN 205
Cdd:COG1196   299 RLEQDIARLEERRRELEERLEELEEELAELEEEL---EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 206 QSSARNSELEEDLRIALQKGAEHEdignvstKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKER 285
Cdd:COG1196   376 EAEEELEELAEELLEALRAAAELA-------AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 286 DLSENLNAVMEKLKSSEERLEKQAREIDEAtTRSIELEALHKHSELKVQKTMEDfssrDTEAKSLTEKSKDLEEKIRVYE 365
Cdd:COG1196   449 EEEAELEEEEEALLELLAELLEEAALLEAA-LAELLEELAEAAARLLLLLEAEA----DYEGFLEGVKAALLLAGLRGLA 523
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 366 GKLAEAcgQSLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETAIEKLnqkdteAKDLITKLKSHENVIEEH 445
Cdd:COG1196   524 GAVAVL--IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL------PLDKIRARAALAAALARG 595
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 446 KRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGdlaevnIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKE 525
Cdd:COG1196   596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA------LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 526 LQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLEs 605
Cdd:COG1196   670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL- 748
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063680478 606 kfEQVEIHLKEEVEKVAELTSKLQEHKhkaSDRDVLEE---KAIQLHKELQASHTAISEQKE 664
Cdd:COG1196   749 --EEEALEELPEPPDLEELERELERLE---REIEALGPvnlLAIEEYEELEERYDFLSEQRE 805
PTZ00121 PTZ00121
MAEBL; Provisional
20-726 1.11e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 62.47  E-value: 1.11e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   20 EDTVMEKEEEDTIFDGGFVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKEltEVKEAFDGLGLELENSRKKM 99
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE--DARKAEEARKAEDAKRVEIA 1157
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  100 IELEDRIRISalEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQnsvlEQKLKSLEELSEKVSELKSALIVA 179
Cdd:PTZ00121  1158 RKAEDARKAE--EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARK----AEEERKAEEARKAEDAKKAEAVKK 1231
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  180 EEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVElqglfqtsqlKLEKAEEK 259
Cdd:PTZ00121  1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD----------EAKKAEEK 1301
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  260 LKDLEAiqvKNSSLEAtlSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMED 339
Cdd:PTZ00121  1302 KKADEA---KKKAEEA--KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  340 FSSRDTEAKSLTEKSKDLEEKIRVYEGKlaeacgqslSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETAIE 419
Cdd:PTZ00121  1377 KKKADAAKKKAEEKKKADEAKKKAEEDK---------KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  420 KLNQKDTEAKDLIT-KLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEK-ENGDLAEVNIKLNQ- 496
Cdd:PTZ00121  1448 EAKKKAEEAKKAEEaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKaDEAKKAEEAKKADEa 1527
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  497 KLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQL 576
Cdd:PTZ00121  1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  577 QVDKSKSDDMvsqiEKLSALVAEKSVLESK-FEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQAS 655
Cdd:PTZ00121  1608 KAEEAKKAEE----AKIKAEELKKAEEEKKkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063680478  656 HTAISEQKEALSHKHSELEAT--LKKSQEELDAKKSvivhlESKLNELEQKVKLADAKSKETESTGKEEEVEV 726
Cdd:PTZ00121  1684 EEDEKKAAEALKKEAEEAKKAeeLKKKEAEEKKKAE-----ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
88-635 1.90e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 51.66  E-value: 1.90e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   88 LGLELENSRKKMIELEDRIRISALeAEKLEELQKQsASELEEKLKISDERYSKTDAL----LSQALSQNSVLEQKLKSLE 163
Cdd:pfam15921  260 LLLQQHQDRIEQLISEHEVEITGL-TEKASSARSQ-ANSIQSQLEIIQEQARNQNSMymrqLSDLESTVSQLRSELREAK 337
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  164 ELSE-KVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAE--HEDIGNVST---- 236
Cdd:pfam15921  338 RMYEdKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTGNSITidhl 417
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  237 -----KRSVELQGLFQT-SQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKErDLSENLNAVMEKLKSSEERLEKQAR 310
Cdd:pfam15921  418 rreldDRNMEVQRLEALlKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE-STKEMLRKVVEELTAKKMTLESSER 496
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  311 EIDEATT------RSIE-----LEALHKHSELKVQKTM------EDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACG 373
Cdd:pfam15921  497 TVSDLTAslqekeRAIEatnaeITKLRSRVDLKLQELQhlknegDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  374 QSLSLQEELDQSSAENELLADTNNQLKIKIQELEgYLDSEKETAIEKLNQKDTEAKDLITKLKsheNVIEEHKRQVLEAS 453
Cdd:pfam15921  577 LVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK-ILKDKKDAKIRELEARVSDLELEKVKLV---NAGSERLRAVKDIK 652
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  454 GVADTRKVEVEEALLKLNTLESTIEELEK----ENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKelqiT 529
Cdd:pfam15921  653 QERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMK----V 728
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  530 IEDLTKQLTSER---ERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEklsALVAEKSVLESK 606
Cdd:pfam15921  729 AMGMQKQITAKRgqiDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE---VLRSQERRLKEK 805
                          570       580
                   ....*....|....*....|....*....
gi 1063680478  607 FEQVEIHLKEEVEKVAELTSKLQEHKHKA 635
Cdd:pfam15921  806 VANMEVALDKASLQFAECQDIIQRQEQES 834
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
37-711 4.46e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 76.63  E-value: 4.46e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   37 FVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKELTEVKEAfdgLGLELENSRKKMIELEDRIRisalEAEKL 116
Cdd:TIGR02168  217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIE----ELQKE 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  117 EELQKQSASELEEKLKISDERyskTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEgkkssiqMQEYQEK 196
Cdd:TIGR02168  290 LYALANEISRLEQQKQILRER---LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE-------LESLEAE 359
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  197 VSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEAT 276
Cdd:TIGR02168  360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  277 LSVAMEKE--RDLSENLNAVMEKLKSSEERLEKQAREIDEAttrsiELEALHKHSELKVQKTM-EDFSSRDTEAKSLTEK 353
Cdd:TIGR02168  440 AELEELEEelEELQEELERLEEALEELREELEEAEQALDAA-----ERELAQLQARLDSLERLqENLEGFSEGVKALLKN 514
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  354 SKDLE-------EKIRV---YEGKLAEACGQSLSLQEELDQSSAENELLADTNNQL-KIKIQEL----EGYLDSEKETAI 418
Cdd:TIGR02168  515 QSGLSgilgvlsELISVdegYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELgRVTFLPLdsikGTEIQGNDREIL 594
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  419 EKLNQKDTEAKDLITKLKSHENVIEEHKRQVL----------------------------------------EASGVADT 458
Cdd:TIGR02168  595 KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalelakklrpgyrivtldgdlvrpggvitggsaKTNSSILE 674
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  459 RKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEkYQQAKELQITIEDLTKQLT 538
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLS 753
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  539 SERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKsksDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEV 618
Cdd:TIGR02168  754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK---EELKALREALDELRAELTLLNEEAANLRERLESLE 830
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  619 EKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKL 698
Cdd:TIGR02168  831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
                          730
                   ....*....|...
gi 1063680478  699 NELEQKVKLADAK 711
Cdd:TIGR02168  911 SELRRELEELREK 923
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
37-725 8.18e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 72.40  E-value: 8.18e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   37 FVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKhKELTEVKEAFDGLGLELENSRKKMIELEDRI--------RI 108
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELE-EKLEELKEELESLEAELEELEAELEELESRLeeleeqleTL 384
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  109 SALEAEKLEELQKQSA--SELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKS--LEELSEKVSELKSALIVAEEEGK 184
Cdd:TIGR02168  385 RSKVAQLELQIASLNNeiERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQaeLEELEEELEELQEELERLEEALE 464
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  185 KSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRialQKGAEHEDIGNVSTKRSVELQGLFQTSQL-----KLEKAEEK 259
Cdd:TIGR02168  465 ELREELEEAEQALDAAERELAQLQARLDSLERLQE---NLEGFSEGVKALLKNQSGLSGILGVLSELisvdeGYEAAIEA 541
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  260 L--KDLEAIQVKNSSlEATLSVAMEKERDLSenLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTM 337
Cdd:TIGR02168  542 AlgGRLQAVVVENLN-AAKKAIAFLKQNELG--RVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  338 EDFSSRDTEAKSLTE-----KSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENelladtnnqlKIKIQELEgyldS 412
Cdd:TIGR02168  619 SYLLGGVLVVDDLDNalelaKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILER----------RREIEELE----E 684
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  413 EKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNI 492
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  493 KLNQKLanqgsetddfqAKLSVLEAEKYQQAKELQITIEDLTKQLTSererLRSQISSLEEEKNQVNEIYQSTKNELVKL 572
Cdd:TIGR02168  765 ELEERL-----------EEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLNEEAANLRERLESL 829
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  573 QAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRdvLEEKAIQLHKel 652
Cdd:TIGR02168  830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE--LEELSEELRE-- 905
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063680478  653 qashtaISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNElEQKVKLADAKSKETESTGKEEEVE 725
Cdd:TIGR02168  906 ------LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEAR 971
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
56-664 8.01e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 8.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  56 KAEKQLKSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAEKLEE----------LQKQSAS 125
Cdd:COG1196   219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELeleeaqaeeyELLAELA 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 126 ELEEKLKISDERYSKTDALLSQALSQNSVLEQKLkslEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLN 205
Cdd:COG1196   299 RLEQDIARLEERRRELEERLEELEEELAELEEEL---EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 206 QSSARNSELEEDLRIALQKGAEHEdignvstKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKER 285
Cdd:COG1196   376 EAEEELEELAEELLEALRAAAELA-------AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 286 DLSENLNAVMEKLKSSEERLEKQAREIDEAtTRSIELEALHKHSELKVQKTMEDfssrDTEAKSLTEKSKDLEEKIRVYE 365
Cdd:COG1196   449 EEEAELEEEEEALLELLAELLEEAALLEAA-LAELLEELAEAAARLLLLLEAEA----DYEGFLEGVKAALLLAGLRGLA 523
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 366 GKLAEAcgQSLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETAIEKLnqkdteAKDLITKLKSHENVIEEH 445
Cdd:COG1196   524 GAVAVL--IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL------PLDKIRARAALAAALARG 595
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 446 KRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGdlaevnIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKE 525
Cdd:COG1196   596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA------LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 526 LQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLEs 605
Cdd:COG1196   670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL- 748
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063680478 606 kfEQVEIHLKEEVEKVAELTSKLQEHKhkaSDRDVLEE---KAIQLHKELQASHTAISEQKE 664
Cdd:COG1196   749 --EEEALEELPEPPDLEELERELERLE---REIEALGPvnlLAIEEYEELEERYDFLSEQRE 805
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
58-688 1.42e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 64.96  E-value: 1.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  58 EKQLKSL----EDALqlhdvKHKELTEVKEAFDG--LGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEkl 131
Cdd:COG1196   199 ERQLEPLerqaEKAE-----RYRELKEELKELEAelLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE-- 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 132 kisderysktdaLLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARN 211
Cdd:COG1196   272 ------------LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 212 SELEEDLRialqkgaehedignvstkrsvELQGLFQTSQLKLEKAEEKLKDLEAIQVKN----SSLEATLSVAMEKERDL 287
Cdd:COG1196   340 EELEEELE---------------------EAEEELEEAEAELAEAEEALLEAEAELAEAeeelEELAEELLEALRAAAEL 398
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 288 SENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGK 367
Cdd:COG1196   399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 368 LAEacgqslsLQEELDQSSAENELLADTnnqlkikIQELEGYLDSEKETAIEKLNQKDTEA-KDLITKLKSHENVIEEHK 446
Cdd:COG1196   479 LAE-------LLEELAEAAARLLLLLEA-------EADYEGFLEGVKAALLLAGLRGLAGAvAVLIGVEAAYEAALEAAL 544
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 447 RQVLEASGVADTRKVEVEEALLK--------------LNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKL 512
Cdd:COG1196   545 AAALQNIVVEDDEVAAAAIEYLKaakagratflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 513 SVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEK 592
Cdd:COG1196   625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 593 LSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKAS------------DRDVLEEKAIQLHKELQA------ 654
Cdd:COG1196   705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLeeealeelpeppDLEELERELERLEREIEAlgpvnl 784
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|.
gi 1063680478 655 ----SHTAISEQKEALSHKHSELE---ATLKKSQEELDAKK 688
Cdd:COG1196   785 laieEYEELEERYDFLSEQREDLEearETLEEAIEEIDRET 825
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
55-593 2.27e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 64.19  E-value: 2.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  55 EKAEKQLKSLEDALQLHDVKHKELTEvkeAFDGLGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKIS 134
Cdd:COG1196   256 EELEAELAELEAELEELRLELEELEL---ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 135 DERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSEL 214
Cdd:COG1196   333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 215 EEDLRIALQKGAEHEDignvstKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAV 294
Cdd:COG1196   413 LERLERLEEELEELEE------ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 295 MEklKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQ 374
Cdd:COG1196   487 AE--AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE 564
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 375 SLSLQEEldqsSAENELLADTNNQLKIKIQELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASG 454
Cdd:COG1196   565 YLKAAKA----GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 455 VADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLT 534
Cdd:COG1196   641 TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1063680478 535 KQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKL 593
Cdd:COG1196   721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
252-599 2.37e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 64.31  E-value: 2.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  252 KLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDlsenlnavmEKLKSSEERLEKQAREIDEATTRSIELEALHKHSEL 331
Cdd:TIGR02168  204 SLERQAEKAERYKELKAELRELELALLVLRLEELR---------EELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  332 KVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLD 411
Cdd:TIGR02168  275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  412 SEKEtaieklnqkdteakdlitKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEvn 491
Cdd:TIGR02168  355 SLEA------------------ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED-- 414
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  492 iklnqKLANQGSETDDFQAKLSVLEAEKYQQAKElqiTIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVK 571
Cdd:TIGR02168  415 -----RRERLQQEIEELLKKLEEAELKELQAELE---ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
                          330       340
                   ....*....|....*....|....*...
gi 1063680478  572 LQAQLQVDKsksdDMVSQIEKLSALVAE 599
Cdd:TIGR02168  487 LQARLDSLE----RLQENLEGFSEGVKA 510
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
55-749 4.27e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 4.27e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   55 EKAEKQLKSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELEDR-----IRISALEAEK--LEELQKQSASEL 127
Cdd:TIGR02168  239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyalaNEISRLEQQKqiLRERLANLERQL 318
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  128 EEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQS 207
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  208 SARNSELEEDL-RIALQKGAEHEDIGNVSTKRSV----ELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAME 282
Cdd:TIGR02168  399 NNEIERLEARLeRLEDRRERLQQEIEELLKKLEEaelkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  283 KERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKH--SELKVQK-----------------TMEDFSSR 343
Cdd:TIGR02168  479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELISVDEgyeaaieaalggrlqavVVENLNAA 558
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  344 DTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQELEG--YLDSEKETAIEKL 421
Cdd:TIGR02168  559 KKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvLVVDDLDNALELA 638
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  422 NQKD------TEAKDLITK-------LKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLA 488
Cdd:TIGR02168  639 KKLRpgyrivTLDGDLVRPggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  489 EVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTK------QLTSERERLRSQISSLEEEKNQVNEIY 562
Cdd:TIGR02168  719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEleerleEAEEELAEAEAEIEELEAQIEQLKEEL 798
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  563 QSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLE 642
Cdd:TIGR02168  799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  643 EKAIQLHKELQASHtaiSEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVK-LADAKSKETESTGKE 721
Cdd:TIGR02168  879 LNERASLEEALALL---RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnLQERLSEEYSLTLEE 955
                          730       740
                   ....*....|....*....|....*...
gi 1063680478  722 EEVEVKSRDSDLSFSNPKQTKIKKNLDA 749
Cdd:TIGR02168  956 AEALENKIEDDEEEARRRLKRLENKIKE 983
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
399-713 4.81e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 4.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 399 LKIKIQELEGYLDS---EKETAiEKLNQKDTEAKDLITKLKSHEnvIEEHKRQVLEASGVADTRKVEVEEALLKLNTLES 475
Cdd:COG1196   191 LEDILGELERQLEPlerQAEKA-ERYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEA 267
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 476 TIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEK---YQQAKELQITIEDLTKQLTSERERLRSQISSLE 552
Cdd:COG1196   268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRrelEERLEELEEELAELEEELEELEEELEELEEELE 347
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 553 EEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHK 632
Cdd:COG1196   348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 633 HKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLADAKS 712
Cdd:COG1196   428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507

                  .
gi 1063680478 713 K 713
Cdd:COG1196   508 E 508
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
194-725 1.11e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.26  E-value: 1.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 194 QEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSL 273
Cdd:COG1196   221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 274 EATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEK 353
Cdd:COG1196   301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 354 SKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQELEgyldSEKETAIEKLNQKDTEAKDLIT 433
Cdd:COG1196   381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE----EEEEEEEEALEEAAEEEAELEE 456
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 434 KLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLS 513
Cdd:COG1196   457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 514 VLEAEKYQQAKELQITIED---LTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDksksDDMVSQI 590
Cdd:COG1196   537 EAALEAALAAALQNIVVEDdevAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA----SDLREAD 612
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 591 EKLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKH 670
Cdd:COG1196   613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063680478 671 SELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEVE 725
Cdd:COG1196   693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
PTZ00121 PTZ00121
MAEBL; Provisional
20-726 1.11e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 62.47  E-value: 1.11e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   20 EDTVMEKEEEDTIFDGGFVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKEltEVKEAFDGLGLELENSRKKM 99
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE--DARKAEEARKAEDAKRVEIA 1157
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  100 IELEDRIRISalEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQnsvlEQKLKSLEELSEKVSELKSALIVA 179
Cdd:PTZ00121  1158 RKAEDARKAE--EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARK----AEEERKAEEARKAEDAKKAEAVKK 1231
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  180 EEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVElqglfqtsqlKLEKAEEK 259
Cdd:PTZ00121  1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD----------EAKKAEEK 1301
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  260 LKDLEAiqvKNSSLEAtlSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMED 339
Cdd:PTZ00121  1302 KKADEA---KKKAEEA--KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  340 FSSRDTEAKSLTEKSKDLEEKIRVYEGKlaeacgqslSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETAIE 419
Cdd:PTZ00121  1377 KKKADAAKKKAEEKKKADEAKKKAEEDK---------KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  420 KLNQKDTEAKDLIT-KLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEK-ENGDLAEVNIKLNQ- 496
Cdd:PTZ00121  1448 EAKKKAEEAKKAEEaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKaDEAKKAEEAKKADEa 1527
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  497 KLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQL 576
Cdd:PTZ00121  1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  577 QVDKSKSDDMvsqiEKLSALVAEKSVLESK-FEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQAS 655
Cdd:PTZ00121  1608 KAEEAKKAEE----AKIKAEELKKAEEEKKkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063680478  656 HTAISEQKEALSHKHSELEAT--LKKSQEELDAKKSvivhlESKLNELEQKVKLADAKSKETESTGKEEEVEV 726
Cdd:PTZ00121  1684 EEDEKKAAEALKKEAEEAKKAeeLKKKEAEEKKKAE-----ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
57-561 2.27e-09

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 61.21  E-value: 2.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  57 AEKQLKSLEDALQLHDVKHKELTEVKEAFDGlglELENSRKKMIELEDRIrisALEAEKLEELQkqsasELEEklKISDE 136
Cdd:PRK02224  197 EEKEEKDLHERLNGLESELAELDEEIERYEE---QREQARETRDEADEVL---EEHEERREELE-----TLEA--EIEDL 263
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 137 RYSKTDALLSQALSQNSVLEQKlKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEE 216
Cdd:PRK02224  264 RETIAETEREREELAEEVRDLR-ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNE 342
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 217 DLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVME 296
Cdd:PRK02224  343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 297 KLKSSEERLEKQAREIDEATTRSIELEALHKHSE----LKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEAc 372
Cdd:PRK02224  423 ELREREAELEATLRTARERVEEAEALLEAGKCPEcgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA- 501
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 373 gqslslqEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKetaiEKLNQKDTEAKDLITKLKSHENV---IEEHKRQV 449
Cdd:PRK02224  502 -------EDLVEAEDRIERLEERREDLEELIAERRETIEEKR----ERAEELRERAAELEAEAEEKREAaaeAEEEAEEA 570
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 450 LEASGVADTRKVEVEEALLKLNTLES----------TIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKL---SVLE 516
Cdd:PRK02224  571 REEVAELNSKLAELKERIESLERIRTllaaiadaedEIERLREKREALAELNDERRERLAEKRERKRELEAEFdeaRIEE 650
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*.
gi 1063680478 517 A-EKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEI 561
Cdd:PRK02224  651 ArEDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL 696
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
59-726 2.38e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 61.24  E-value: 2.38e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   59 KQLKSLEDAlQLHDVKHKELTEVKEAFDG--LGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKISDE 136
Cdd:TIGR02169  198 QQLERLRRE-REKAERYQALLKEKREYEGyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  137 RYSKTDALLSQalSQNSVLEQklksLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEE 216
Cdd:TIGR02169  277 LNKKIKDLGEE--EQLRVKEK----IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  217 DLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDL----EAIQVKNSSLEATLSVAMEKERDLSENLN 292
Cdd:TIGR02169  351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLkreiNELKRELDRLQEELQRLSEELADLNAAIA 430
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  293 AVMEKLKSSEERLEKQAREIDEATTrsielealhkhselKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEAC 372
Cdd:TIGR02169  431 GIEAKINELEEEKEDKALEIKKQEW--------------KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  373 GQSLSLQEELDQSSAENELLADTNNQLKIKIQELEGYlDSEKETAIE-----KLN----QKDTEAKDLITKLKSHE---- 439
Cdd:TIGR02169  497 AQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSV-GERYATAIEvaagnRLNnvvvEDDAVAKEAIELLKRRKagra 575
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  440 ----------------------------NVIE-EHKRQVLEASGVADTRKVEVEEA------LLKLNTLESTIEELE--- 481
Cdd:TIGR02169  576 tflplnkmrderrdlsilsedgvigfavDLVEfDPKYEPAFKYVFGDTLVVEDIEAarrlmgKYRMVTLEGELFEKSgam 655
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  482 ----KENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKY---QQAKELQITIEDLTKQLtserERLRSQISSLEEE 554
Cdd:TIGR02169  656 tggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRrieNRLDELSQELSDASRKI----GEIEKEIEQLEQE 731
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  555 KNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVA---------EKSVLESKFEQVEIHLKEEVEKVAELT 625
Cdd:TIGR02169  732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHkleealndlEARLSHSRIPEIQAELSKLEEEVSRIE 811
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  626 SKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKV 705
Cdd:TIGR02169  812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
                          730       740
                   ....*....|....*....|.
gi 1063680478  706 KLADAKSKETESTGKEEEVEV 726
Cdd:TIGR02169  892 DELEAQLRELERKIEELEAQI 912
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
101-728 2.78e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.84  E-value: 2.78e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  101 ELEDRIRISALEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLE----ELSEKVSELKSAL 176
Cdd:TIGR02168  197 ELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTaelqELEEKLEELRLEV 276
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  177 IVAEEEGKKSSIQMQEYQEKVSKLES-------SLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTS 249
Cdd:TIGR02168  277 SELEEEIEELQKELYALANEISRLEQqkqilreRLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  250 QLKLEKAEEKLKDLEAiqvKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEAlhKHS 329
Cdd:TIGR02168  357 EAELEELEAELEELES---RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLE 431
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  330 ELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNN----------QL 399
Cdd:TIGR02168  432 EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEnlegfsegvkAL 511
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  400 KIKIQELEGYL---------DSEKETAIEK---------LNQKDTEAKDLITKLKSHEnvieEHKRQVLEASGVADTRKV 461
Cdd:TIGR02168  512 LKNQSGLSGILgvlselisvDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNE----LGRVTFLPLDSIKGTEIQ 587
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  462 EVEEALLK--------LNTLESTIEELEK------------ENGDLAEVNIKLNQKLANQGSETDDFQAKLSVL---EAE 518
Cdd:TIGR02168  588 GNDREILKniegflgvAKDLVKFDPKLRKalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVItggSAK 667
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  519 KYQQAKELQITIEDLTKQLtserERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQvdksksddmvSQIEKLSALVA 598
Cdd:TIGR02168  668 TNSSILERRREIEELEEKI----EELEEKIAELEKALAELRKELEELEEELEQLRKELE----------ELSRQISALRK 733
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  599 EKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLK 678
Cdd:TIGR02168  734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|
gi 1063680478  679 KSQEELDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEVEVKS 728
Cdd:TIGR02168  814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
376-695 1.18e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 1.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 376 LSLQEELDQSSAENELLADTNNQLKI-KIQELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASG 454
Cdd:COG1196   216 RELKEELKELEAELLLLKLRELEAELeELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 455 VADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLT 534
Cdd:COG1196   296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 535 KQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHL 614
Cdd:COG1196   376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 615 KEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQAshtaiseQKEALSHKHSELEATLKKSQEELDAKKSVIVHL 694
Cdd:COG1196   456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL-------LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528

                  .
gi 1063680478 695 E 695
Cdd:COG1196   529 L 529
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
120-483 1.93e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.14  E-value: 1.93e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  120 QKQSASELEEKLKisderysktdALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSK 199
Cdd:TIGR02168  675 RRREIEELEEKIE----------ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  200 LESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQvknSSLEATLSV 279
Cdd:TIGR02168  745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL---TLLNEEAAN 821
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  280 AMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEE 359
Cdd:TIGR02168  822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  360 KIRVYEGKLAEACGQSLSLQEELDQSSAENElladtnnQLKIKIQELEGYLDSE----KETAIEKLNQKDTEAKDLITKL 435
Cdd:TIGR02168  902 ELRELESKRSELRRELEELREKLAQLELRLE-------GLEVRIDNLQERLSEEysltLEEAEALENKIEDDEEEARRRL 974
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1063680478  436 KSHENVIEEHKRQVLEA-------SGVADTRKVEVEEALLKLNTLESTIEELEKE 483
Cdd:TIGR02168  975 KRLENKIKELGPVNLAAieeyeelKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
47-630 1.02e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 55.84  E-value: 1.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  47 KKYDDDDDEKAEKQLKSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASe 126
Cdd:PRK03918  171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES- 249
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 127 LEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKvselksalivaEEEGKKSSIQMQEYQEKVSKLESSLNQ 206
Cdd:PRK03918  250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK-----------AEEYIKLSEFYEEYLDELREIEKRLSR 318
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 207 SSARNSELEEDLRIALQKGAEHEdignvstkrsvELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATlsvameKERD 286
Cdd:PRK03918  319 LEEEINGIEERIKELEEKEERLE-----------ELKKKLKELEKRLEELEERHELYEEAKAKKEELERL------KKRL 381
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 287 LSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKdlEEKIRVYeg 366
Cdd:PRK03918  382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR--KELLEEY-- 457
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 367 klaeacgqslslQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKEtaIEKLNQKDTEAKDLITKLKSHENVIEEHK 446
Cdd:PRK03918  458 ------------TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE--LIKLKELAEQLKELEEKLKKYNLEELEKK 523
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 447 ----RQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSET-DDFQAKLSVLEA--EK 519
Cdd:PRK03918  524 aeeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEPfyNE 603
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 520 YQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIyqstKNELVKLQAQLQVD--KSKSDDMVSQIEKLSALV 597
Cdd:PRK03918  604 YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL----RKELEELEKKYSEEeyEELREEYLELSRELAGLR 679
                         570       580       590
                  ....*....|....*....|....*....|...
gi 1063680478 598 AEKSVLESKFEQVEIHLKEEVEKVAELTSKLQE 630
Cdd:PRK03918  680 AELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
155-752 3.02e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.29  E-value: 3.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  155 LEQKLKSLEELSEKVSELKSalIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEdlrialqkgaehedignv 234
Cdd:TIGR02168  198 LERQLKSLERQAEKAERYKE--LKAELRELELALLVLRLEELREELEELQEELKEAEEELEE------------------ 257
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  235 STKRSVELQGLFQTSQLKLEKAEEKLkdlEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDE 314
Cdd:TIGR02168  258 LTAELQELEEKLEELRLEVSELEEEI---EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  315 ATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLAD 394
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  395 TNNQLKIKIQELEGYLDS-EKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTL 473
Cdd:TIGR02168  415 RRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  474 ESTIEELEKENGDLAEVniklnqkLANQGSETDDFQAKLSVLE-AEKYQQAKELQITiEDLTKQLTSERERLRSQISSLE 552
Cdd:TIGR02168  495 ERLQENLEGFSEGVKAL-------LKNQSGLSGILGVLSELISvDEGYEAAIEAALG-GRLQAVVVENLNAAKKAIAFLK 566
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  553 E------------------------EKNQVNEIYQSTKNELVKLQAQLQV-------------DKSKSDDMVSQIEKLSA 595
Cdd:TIGR02168  567 QnelgrvtflpldsikgteiqgndrEILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvdDLDNALELAKKLRPGYR 646
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  596 LVAEKSVL----------ESKFEQVEIHLKEEVEkvaELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEA 665
Cdd:TIGR02168  647 IVTLDGDLvrpggvitggSAKTNSSILERRREIE---ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  666 LSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEVEVKSRDSDLSFSNPKQTKIKK 745
Cdd:TIGR02168  724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803

                   ....*..
gi 1063680478  746 NLDAASS 752
Cdd:TIGR02168  804 ALDELRA 810
PTZ00121 PTZ00121
MAEBL; Provisional
3-725 3.16e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 54.38  E-value: 3.16e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478    3 EATKVSSDVPQAKEVTKEDTVMEKEEEDtifdggfvKVEKEGINKKYDDDDDEKAEKQLKSLEDALQlhdvKHKELTEVK 82
Cdd:PTZ00121  1179 EAARKAEEVRKAEELRKAEDARKAEAAR--------KAEEERKAEEARKAEDAKKAEAVKKAEEAKK----DAEEAKKAE 1246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   83 EAFDGLGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKISDERySKTDALLSQALSQNSVLEQKLKSl 162
Cdd:PTZ00121  1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK-KKADEAKKKAEEAKKADEAKKKA- 1324
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  163 EELSEKVSELKSAlivAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIA--LQKGAEHEDIGNVSTKRSV 240
Cdd:PTZ00121  1325 EEAKKKADAAKKK---AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAdaAKKKAEEKKKADEAKKKAE 1401
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  241 ELQGLFQTSQLKLE----------KAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEK--Q 308
Cdd:PTZ00121  1402 EDKKKADELKKAAAakkkadeakkKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKaeE 1481
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  309 AREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAE 388
Cdd:PTZ00121  1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  389 NELLADTNNQL------------------KIKIQELEGYLDSEKETAIEKLnQKDTEAKDLITKLKSHENV---IEEHKR 447
Cdd:PTZ00121  1562 EKKKAEEAKKAeedknmalrkaeeakkaeEARIEEVMKLYEEEKKMKAEEA-KKAEEAKIKAEELKKAEEEkkkVEQLKK 1640
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  448 QVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDL--AEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKE 525
Cdd:PTZ00121  1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  526 LQITIED---LTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSV 602
Cdd:PTZ00121  1721 LKKAEEEnkiKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  603 --LESKFEQVEIHLKEE---VEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATL 677
Cdd:PTZ00121  1801 kdIFDNFANIIEGGKEGnlvINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDD 1880
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*...
gi 1063680478  678 KKSQEELDAKKSVivhlesKLNELEQKVKLADAKSKETESTGKEEEVE 725
Cdd:PTZ00121  1881 EEEIEEADEIEKI------DKDDIEREIPNNNMAGKNNDIIDDKLDKD 1922
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
252-725 5.55e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 53.14  E-value: 5.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 252 KLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLE------KQAREIDEATTRSIELEAL 325
Cdd:PRK03918  222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleekvKELKELKEKAEEYIKLSEF 301
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 326 HKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKirvyegklAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQE 405
Cdd:PRK03918  302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEK--------EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 406 LEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKEng 485
Cdd:PRK03918  374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK-- 451
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 486 dlaEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELqitiedltkqltSERERLRSQISSLEEEKNQVNEIYQST 565
Cdd:PRK03918  452 ---ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL------------KKESELIKLKELAEQLKELEEKLKKYN 516
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 566 KNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKA 645
Cdd:PRK03918  517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 646 IQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEVE 725
Cdd:PRK03918  597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELA 676
PTZ00121 PTZ00121
MAEBL; Provisional
2-569 7.02e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.22  E-value: 7.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478    2 EEATKVSSDVPQAKEVTKEDTVMEKEEEDTIFDGGFVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKELTEV 81
Cdd:PTZ00121  1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   82 KEAFDGLGLE-----LENSRKKMIELE--DRIRISALEAEKLEELQKQSASELE-EKLKISDERYSKTDALLSQALSQNS 153
Cdd:PTZ00121  1405 KKADELKKAAaakkkADEAKKKAEEKKkaDEAKKKAEEAKKADEAKKKAEEAKKaEEAKKKAEEAKKADEAKKKAEEAKK 1484
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  154 VLEQKLKSlEELSEKVSELKSAlivAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGN 233
Cdd:PTZ00121  1485 ADEAKKKA-EEAKKKADEAKKA---AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  234 VSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREID 313
Cdd:PTZ00121  1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  314 EATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYE--GKLAEACGQSLSLQEELDQSSAENEL 391
Cdd:PTZ00121  1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEalKKEAEEAKKAEELKKKEAEEKKKAEE 1720
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  392 LADTNNQLKIKIQELEGYLDSEKETAIEKlnQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRkvevEEALLKLN 471
Cdd:PTZ00121  1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEA--KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD----EEDEKRRM 1794
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  472 TLESTIEELEKENGDLAEVNiKLNQKLANQGSETDDFQAKLSVL-------EAEKYQQAKELQITIEDLTKQLTSERERL 544
Cdd:PTZ00121  1795 EVDKKIKDIFDNFANIIEGG-KEGNLVINDSKEMEDSAIKEVADsknmqleEADAFEKHKFNKNNENGEDGNKEADFNKE 1873
                          570       580
                   ....*....|....*....|....*
gi 1063680478  545 RSQISSLEEEKNQVNEIYQSTKNEL 569
Cdd:PTZ00121  1874 KDLKEDDEEEIEEADEIEKIDKDDI 1898
PTZ00121 PTZ00121
MAEBL; Provisional
3-748 7.58e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.22  E-value: 7.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478    3 EATKVSSDVPQAKEVTKEDTVMEKEEEDTIFDGGFVKVEKEGINKKYDDDDDEKAEK-----QLKSLEDALQLHDVKHKE 77
Cdd:PTZ00121  1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEernneEIRKFEEARMAHFARRQA 1270
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   78 LTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQ 157
Cdd:PTZ00121  1271 AIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  158 KLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEdlriaLQKGAEHEdignvstK 237
Cdd:PTZ00121  1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE-----LKKAAAAK-------K 1418
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  238 RSVELQglfqtsqlklEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEErLEKQAREIDEAtt 317
Cdd:PTZ00121  1419 KADEAK----------KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE-AKKKAEEAKKA-- 1485
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  318 rsielEALHKHSELKVQKTMEdfSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAEnelladtnn 397
Cdd:PTZ00121  1486 -----DEAKKKAEEAKKKADE--AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD--------- 1549
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  398 qlkikiqELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTI 477
Cdd:PTZ00121  1550 -------ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  478 EELEK--ENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERlRSQISSLEEEK 555
Cdd:PTZ00121  1623 EELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA-AEALKKEAEEA 1701
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  556 NQVNEIYQSTKNELVK---LQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEiHLKEEVEKVAELTSKLQEhk 632
Cdd:PTZ00121  1702 KKAEELKKKEAEEKKKaeeLKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA-HLKKEEEKKAEEIRKEKE-- 1778
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  633 hkASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQE-ELDAKKSVIVHLESKLNELEQKVKLADAK 711
Cdd:PTZ00121  1779 --AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmEDSAIKEVADSKNMQLEEADAFEKHKFNK 1856
                          730       740       750
                   ....*....|....*....|....*....|....*...
gi 1063680478  712 SKETESTGKEEEVEVKSRDSDLSF-SNPKQTKIKKNLD 748
Cdd:PTZ00121  1857 NNENGEDGNKEADFNKEKDLKEDDeEEIEEADEIEKID 1894
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
155-714 1.23e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 52.37  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 155 LEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEdlrIALQKGAEHEDIGNV 234
Cdd:PRK03918  181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE---LEKELESLEGSKRKL 257
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 235 STKRSvELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEaTLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDE 314
Cdd:PRK03918  258 EEKIR-ELEERIEELKKEIEELEEKVKELKELKEKAEEYI-KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 315 ATTRSIELEALHKHSELKVQKtMEDFSSRDTEAKSLTEKSKDLEEKIRVY-----EGKLAEACGQSLSLQEELDQSSAEN 389
Cdd:PRK03918  336 KEERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELERLKKRLTGLtpeklEKELEELEKAKEEIEEEISKITARI 414
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 390 ELLADTNNQLKIKIQELEGyldSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLK 469
Cdd:PRK03918  415 GELKKEIKELKKAIEELKK---AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 470 ---LNTLESTIEELEKENGDLAEVNIKlnqKLANQGSETDDFQAKLSVLEAEKYQQAKELQiTIEDLTKQLTSERERLRS 546
Cdd:PRK03918  492 eseLIKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDE 567
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 547 QISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTS 626
Cdd:PRK03918  568 LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK 647
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 627 KLQEHKHKASDRDvlEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLE------SKLNE 700
Cdd:PRK03918  648 ELEELEKKYSEEE--YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEklekalERVEE 725
                         570
                  ....*....|....
gi 1063680478 701 LEQKVKLADAKSKE 714
Cdd:PRK03918  726 LREKVKKYKALLKE 739
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
267-730 1.30e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.96  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 267 QVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQK--TMEDFSSRD 344
Cdd:PRK02224  184 DQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEleTLEAEIEDL 263
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 345 TEAKSLTEKSKD-LEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETAIEKLNQ 423
Cdd:PRK02224  264 RETIAETEREREeLAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE 343
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 424 KDTEAKDlitkLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGS 503
Cdd:PRK02224  344 AESLRED----ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELRE 419
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 504 ETDDFQAKLSVLEA------EKYQQAKELQ------------------ITIEDLTKQ---LTSERERLRSQISSLEEEKN 556
Cdd:PRK02224  420 ERDELREREAELEAtlrtarERVEEAEALLeagkcpecgqpvegsphvETIEEDRERveeLEAELEDLEEEVEEVEERLE 499
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 557 QVneiyqstkNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSV-LESKFEQVEIHLKEEVEKVAELTSKLQEHKHKA 635
Cdd:PRK02224  500 RA--------EDLVEAEDRIERLEERREDLEELIAERRETIEEKRErAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 636 SDRDVLEEKAIQLHKELQ---------ASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNEleqkVK 706
Cdd:PRK02224  572 EEVAELNSKLAELKERIEslerirtllAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE----AR 647
                         490       500
                  ....*....|....*....|....
gi 1063680478 707 LADAKSKETESTGKEEEVEVKSRD 730
Cdd:PRK02224  648 IEEAREDKERAEEYLEQVEEKLDE 671
PTZ00121 PTZ00121
MAEBL; Provisional
2-570 1.84e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.68  E-value: 1.84e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478    2 EEATKVSSDVPQAKEVTKEDTVMEKEEEDTIFDGGFVKVEKEGINKKyDDDDDEKAEKQLKSLEDALQLHDVKHKELTEV 81
Cdd:PTZ00121  1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE-AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   82 KEAfDGLGLELENSRKKmielEDRIRISALEAEKLEELQKQSASELE-EKLKISDERYSKTDALLSQAlsqnsvleQKLK 160
Cdd:PTZ00121  1391 KKA-DEAKKKAEEDKKK----ADELKKAAAAKKKADEAKKKAEEKKKaDEAKKKAEEAKKADEAKKKA--------EEAK 1457
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  161 SLEELSEKVSELKSAlivaeEEGKKSSIQMQEYQEKVSKLESSLNQSsarnseleEDLRIALQKGAEHEDIGNVSTKRSV 240
Cdd:PTZ00121  1458 KAEEAKKKAEEAKKA-----DEAKKKAEEAKKADEAKKKAEEAKKKA--------DEAKKAAEAKKKADEAKKAEEAKKA 1524
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  241 ElqglfqtsqlKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERdlSENLNAVMEKLKSSEER--LEKQAREIDEATTR 318
Cdd:PTZ00121  1525 D----------EAKKAEEAKKADEAKKAEEKKKADELKKAEELKK--AEEKKKAEEAKKAEEDKnmALRKAEEAKKAEEA 1592
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  319 SIElEALHKHSELKVQKTMEdfSSRDTEAKSLTEKSKDLEE---KIRVYEGKLAEACGQSLSLQEELDQSSAENELLADT 395
Cdd:PTZ00121  1593 RIE-EVMKLYEEEKKMKAEE--AKKAEEAKIKAEELKKAEEekkKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  396 NNQLKIKIQELEGYLDSEKETAiEKLNQKDTEAKdlitKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLES 475
Cdd:PTZ00121  1670 AEEDKKKAEEAKKAEEDEKKAA-EALKKEAEEAK----KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK 1744
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  476 TIEELEKENGDLAEVNiklNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEK 555
Cdd:PTZ00121  1745 KAEEAKKDEEEKKKIA---HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVI 1821
                          570
                   ....*....|....*
gi 1063680478  556 NQVNEIYQSTKNELV 570
Cdd:PTZ00121  1822 NDSKEMEDSAIKEVA 1836
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
88-635 1.90e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 51.66  E-value: 1.90e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   88 LGLELENSRKKMIELEDRIRISALeAEKLEELQKQsASELEEKLKISDERYSKTDAL----LSQALSQNSVLEQKLKSLE 163
Cdd:pfam15921  260 LLLQQHQDRIEQLISEHEVEITGL-TEKASSARSQ-ANSIQSQLEIIQEQARNQNSMymrqLSDLESTVSQLRSELREAK 337
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  164 ELSE-KVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAE--HEDIGNVST---- 236
Cdd:pfam15921  338 RMYEdKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTGNSITidhl 417
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  237 -----KRSVELQGLFQT-SQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKErDLSENLNAVMEKLKSSEERLEKQAR 310
Cdd:pfam15921  418 rreldDRNMEVQRLEALlKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE-STKEMLRKVVEELTAKKMTLESSER 496
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  311 EIDEATT------RSIE-----LEALHKHSELKVQKTM------EDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACG 373
Cdd:pfam15921  497 TVSDLTAslqekeRAIEatnaeITKLRSRVDLKLQELQhlknegDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  374 QSLSLQEELDQSSAENELLADTNNQLKIKIQELEgYLDSEKETAIEKLNQKDTEAKDLITKLKsheNVIEEHKRQVLEAS 453
Cdd:pfam15921  577 LVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK-ILKDKKDAKIRELEARVSDLELEKVKLV---NAGSERLRAVKDIK 652
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  454 GVADTRKVEVEEALLKLNTLESTIEELEK----ENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKelqiT 529
Cdd:pfam15921  653 QERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMK----V 728
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  530 IEDLTKQLTSER---ERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEklsALVAEKSVLESK 606
Cdd:pfam15921  729 AMGMQKQITAKRgqiDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE---VLRSQERRLKEK 805
                          570       580
                   ....*....|....*....|....*....
gi 1063680478  607 FEQVEIHLKEEVEKVAELTSKLQEHKHKA 635
Cdd:pfam15921  806 VANMEVALDKASLQFAECQDIIQRQEQES 834
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
91-439 2.30e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.22  E-value: 2.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   91 ELENSRKKMIELEDRI-RISALEAEKLEELqkqsaseleEKLKISDERYSKTDALLSQalSQNSVLEQKLKSLEELSEKV 169
Cdd:TIGR02169  171 KKEKALEELEEVEENIeRLDLIIDEKRQQL---------ERLRREREKAERYQALLKE--KREYEGYELLKEKEALERQK 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  170 SELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEhedignvstkrsvELQGLFQTS 249
Cdd:TIGR02169  240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG-------------ELEAEIASL 306
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  250 QLKLEKAEEKLKDLEaiqvknssleatlsvamEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHS 329
Cdd:TIGR02169  307 ERSIAEKERELEDAE-----------------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  330 ELKVQktmedfsSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAEnelLADTNNQLKIKIQELEGy 409
Cdd:TIGR02169  370 RAELE-------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE---LADLNAAIAGIEAKINE- 438
                          330       340       350
                   ....*....|....*....|....*....|
gi 1063680478  410 LDSEKETAIEKLNQKDTEAKDLITKLKSHE 439
Cdd:TIGR02169  439 LEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
272-616 2.71e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.22  E-value: 2.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  272 SLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLT 351
Cdd:TIGR02169  685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  352 EKSKDLEEKIRVYEGKLAEAcgQSLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDS---EKETAIEKLNQKDTEA 428
Cdd:TIGR02169  765 ARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlEKEYLEKEIQELQEQR 842
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  429 KDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDF 508
Cdd:TIGR02169  843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  509 QAKLSVLEAEKYQQAKELQITIEDLTK-----QLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKS 583
Cdd:TIGR02169  923 KAKLEALEEELSEIEDPKGEDEEIPEEelsleDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002
                          330       340       350
                   ....*....|....*....|....*....|...
gi 1063680478  584 DDMVSQIEKLSALvaEKSVLESKFEQVEIHLKE 616
Cdd:TIGR02169 1003 KAILERIEEYEKK--KREVFMEAFEAINENFNE 1033
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
498-744 5.51e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.38  E-value: 5.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 498 LANQGSETDDFQAKLSVLEAEKYQQAKELQitiedltkQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQ 577
Cdd:COG4942    15 AAAQADAAAEAEAELEQLQQEIAELEKELA--------ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 578 VDKSKSDDMVSQIEKLSALVAEKSVLESKFEQV-EIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASH 656
Cdd:COG4942    87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQpPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 657 TAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEVEVKSRDSDLSFS 736
Cdd:COG4942   167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246

                  ....*...
gi 1063680478 737 NPKQTKIK 744
Cdd:COG4942   247 GFAALKGK 254
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
112-704 8.60e-06

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 49.58  E-value: 8.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  112 EAEKLEELQKQSASELEEKLKISDERySKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEG------KK 185
Cdd:TIGR00618  230 HLREALQQTQQSHAYLTQKREAQEEQ-LKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavtqieQQ 308
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  186 SSIQMQEYQEKVSKLESSLNQSSA---RNSELEEDLRIALQKGAEHEDIGNVSTK---------RSVELQGLFQTSQLKL 253
Cdd:TIGR00618  309 AQRIHTELQSKMRSRAKLLMKRAAhvkQQSSIEEQRRLLQTLHSQEIHIRDAHEVatsireiscQQHTLTQHIHTLQQQK 388
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  254 EKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKV 333
Cdd:TIGR00618  389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  334 QKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQS------SAENELLADTNNQLKIKIQELE 407
Cdd:TIGR00618  469 KEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdnpgplTRRMQRGEQTYAQLETSEEDVY 548
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  408 GYLDSEKETAIE-------------KLNQKDTEAKDLITKLKSHENVIE-------EHKRQVLEASGVADTRKVEVEEAL 467
Cdd:TIGR00618  549 HQLTSERKQRASlkeqmqeiqqsfsILTQCDNRSKEDIPNLQNITVRLQdlteklsEAEDMLACEQHALLRKLQPEQDLQ 628
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  468 LKLNTLESTIEELEKENGDLAEVNIKL---NQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITieDLTKQLTSERERL 544
Cdd:TIGR00618  629 DVRLHLQQCSQELALKLTALHALQLTLtqeRVREHALSIRVLPKELLASRQLALQKMQSEKEQLT--YWKEMLAQCQTLL 706
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  545 RSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQV-DKSKSDDMVSQIEKLSALVAEKSV----------LESKFEQVEIH 613
Cdd:TIGR00618  707 RELETHIEEYDREFNEIENASSSLGSDLAAREDAlNQSLKELMHQARTVLKARTEAHFNnneevtaalqTGAELSHLAAE 786
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  614 LKEEVEKVAELTSKLQEHK-----HKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELE--ATLKKSQEELDA 686
Cdd:TIGR00618  787 IQFFNRLREEDTHLLKTLEaeigqEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLkyEECSKQLAQLTQ 866
                          650
                   ....*....|....*...
gi 1063680478  687 KKSVIVHLESKLNELEQK 704
Cdd:TIGR00618  867 EQAKIIQLSDKLNGINQI 884
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
39-317 9.38e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.28  E-value: 9.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   39 KVEKEGINKKYDDDDDEKAEKQLKSLEDALQL----HDVKHKELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAE 114
Cdd:TIGR02168  769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKAlreaLDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  115 KLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQ 194
Cdd:TIGR02168  849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  195 EKVSKLESSLNQSSARNSELEEDlrialqkgaEHEDIGNVSTKRSVELQGLfqtsQLKLEKAEEKLKDLEAIqvknsSLE 274
Cdd:TIGR02168  929 LRLEGLEVRIDNLQERLSEEYSL---------TLEEAEALENKIEDDEEEA----RRRLKRLENKIKELGPV-----NLA 990
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1063680478  275 ATLSVAMEKERdlSENLNAVMEKLKSSEERLEKQAREIDEATT 317
Cdd:TIGR02168  991 AIEEYEELKER--YDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
459-750 1.17e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.91  E-value: 1.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  459 RKVEVEEALLKLNTLESTIEELEKEngdlaevniklnqkLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLT 538
Cdd:TIGR02169  221 REYEGYELLKEKEALERQKEAIERQ--------------LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  539 SERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEV 618
Cdd:TIGR02169  287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  619 E----KVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEAtlkksqeELDAKKSVIVHL 694
Cdd:TIGR02169  367 EdlraELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA-------AIAGIEAKINEL 439
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063680478  695 ESKLNELEQKVKLADAKSKETESTGKEEEVEVKSRDSDLSFSNPKQTKIKKNLDAA 750
Cdd:TIGR02169  440 EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
55-616 1.61e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  55 EKAEKQLKSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELEDRIrisaleaEKLEELQKQSASELEEKLKIS 134
Cdd:COG1196   288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL-------EELEEELEEAEEELEEAEAEL 360
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 135 DERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSEL 214
Cdd:COG1196   361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 215 EEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAV 294
Cdd:COG1196   441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 295 MEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQ 374
Cdd:COG1196   521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 375 SLSLQEELDQSSAENELLADT--NNQLKIKIQELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEA 452
Cdd:COG1196   601 VDLVASDLREADARYYVLGDTllGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 453 SGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITIED 532
Cdd:COG1196   681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 533 LTKQLTSERERLRSQISSLEEeknqVN----EIYQSTKNELVKLQAQLqvdksksDDMVSQIEKLSALVAE-----KSVL 603
Cdd:COG1196   761 DLEELERELERLEREIEALGP----VNllaiEEYEELEERYDFLSEQR-------EDLEEARETLEEAIEEidretRERF 829
                         570
                  ....*....|...
gi 1063680478 604 ESKFEQVEIHLKE 616
Cdd:COG1196   830 LETFDAVNENFQE 842
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
91-695 5.24e-05

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 46.97  E-value: 5.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   91 ELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSE--- 167
Cdd:TIGR01612  541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEyik 620
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  168 ------KVSELKSALIvaEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEED-LRIALQKGAEHEDIGNVSTKRSV 240
Cdd:TIGR01612  621 kaidlkKIIENNNAYI--DELAKISPYQVPEHLKNKDKIYSTIKSELSKIYEDDIDaLYNELSSIVKENAIDNTEDKAKL 698
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  241 ElqglfqTSQLKLEKAEEKLKDLEAIQV----------KNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLekqAR 310
Cdd:TIGR01612  699 D------DLKSKIDKEYDKIQNMETATVelhlsnienkKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKEL---SN 769
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  311 EIDEATTRSIELEALH-KHSELKVQKTMEDF--SSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELdqsSA 387
Cdd:TIGR01612  770 KINDYAKEKDELNKYKsKISEIKNHYNDQINidNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDF---LN 846
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  388 ENELLADTNNQLKIKIqelegylDSEKETAIEKLNQKDTEAKDliTKLKSHENVIEEHKRQVLEASGvadtrkvEVEEAL 467
Cdd:TIGR01612  847 KVDKFINFENNCKEKI-------DSEHEQFAELTNKIKAEISD--DKLNDYEKKFNDSKSLINEINK-------SIEEEY 910
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  468 LKLNTL----------ESTIEELEKENGDLAEVNIKLNQKLAN-------QGSETDDFQAKLSVLEAEKYQQAKELQIT- 529
Cdd:TIGR01612  911 QNINTLkkvdeyikicENTKESIEKFHNKQNILKEILNKNIDTikesnliEKSYKDKFDNTLIDKINELDKAFKDASLNd 990
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  530 -----------IEDLTKQLTSERERLRSQisSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLsalva 598
Cdd:TIGR01612  991 yeaknnelikyFNDLKANLGKNKENMLYH--QFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKE----- 1063
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  599 eksvLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLK 678
Cdd:TIGR01612 1064 ----IGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKK 1139
                          650
                   ....*....|....*..
gi 1063680478  679 KSQEELDAKKSVIVHLE 695
Cdd:TIGR01612 1140 KSENYIDEIKAQINDLE 1156
PRK11281 PRK11281
mechanosensitive channel MscK;
462-718 5.29e-05

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.83  E-value: 5.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  462 EVEEALLKlNTLESTIEELEKENgDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKElqiTIEDLT-KQLTSE 540
Cdd:PRK11281    55 EAEDKLVQ-QDLEQTLALLDKID-RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRE---TLSTLSlRQLESR 129
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  541 RERLRSQISSLEEEKNQVNE--IYQST-----KNELVKLQAQLQ--------VDKSKSDDMVSQIEKLSAlvaEKSVLES 605
Cdd:PRK11281   130 LAQTLDQLQNAQNDLAEYNSqlVSLQTqperaQAALYANSQRLQqirnllkgGKVGGKALRPSQRVLLQA---EQALLNA 206
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  606 KFEQveihLKEEVEKVAELTSKLQehkhkaSDRDVLEEKAIQLHKELQASHTAISEQKEALShkhselEATLKKSQEELD 685
Cdd:PRK11281   207 QNDL----QRKSLEGNTQLQDLLQ------KQRDYLTARIQRLEHQLQLLQEAINSKRLTLS------EKTVQEAQSQDE 270
                          250       260       270
                   ....*....|....*....|....*....|...
gi 1063680478  686 AKKSVIVHLESKlnELEQKVKLADAKSKETEST 718
Cdd:PRK11281   271 AARIQANPLVAQ--ELEINLQLSQRLLKATEKL 301
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
357-633 6.44e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 46.76  E-value: 6.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  357 LEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQELegylDSEKETAIEKLNQKDTEAKDLITKLK 436
Cdd:pfam12128  246 LQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTL----DDQWKEKRDELNGELSAADAAVAKDR 321
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  437 SHENVIEEHKRQVLEASgvADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLE 516
Cdd:pfam12128  322 SELEALEDQHGAFLDAD--IETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKL 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  517 AEKYQQAKELQITIEDLTKQLTSE-RERLRSQISSLEEEKNQVNEIYQSTKNELVKLQA--QLQVDKSKSDDMVSQIE-- 591
Cdd:pfam12128  400 AKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATAtpELLLQLENFDERIERARee 479
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 1063680478  592 ------KLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKH 633
Cdd:pfam12128  480 qeaanaEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELEL 527
PLN02939 PLN02939
transferase, transferring glycosyl groups
374-730 6.67e-05

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 46.43  E-value: 6.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 374 QSLSLQEELDQSSAENELLADTNNQLKIKIQElEGYLDSEKETAIEKLNQKDTEAKDlitklksHENVIEEHKRQVLEAS 453
Cdd:PLN02939   40 RGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDE-NGQLENTSLRTVMELPQKSTSSDD-------DHNRASMQRDEAIAAI 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 454 GVADTRKVEVEEAL--LKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEA------EKYQQAKE 525
Cdd:PLN02939  112 DNEQQTNSKDGEQLsdFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMrlsetdARIKLAAQ 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 526 LQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLES 605
Cdd:PLN02939  192 EKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDA 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 606 KFEQVEIHLKEEVEKVAELTSKLQehkhkasdrDVLEEKAIQLHKEL-----QASHTAIS-EQKEALSHKHSELEATLKK 679
Cdd:PLN02939  272 SLRELESKFIVAQEDVSKLSPLQY---------DCWWEKVENLQDLLdratnQVEKAALVlDQNQDLRDKVDKLEASLKE 342
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063680478 680 ------SQEELDAKKSVIVHLESKLN----ELEQKVKLADAKSKETESTGKE--EEVEVKSRD 730
Cdd:PLN02939  343 anvskfSSYKVELLQQKLKLLEERLQasdhEIHSYIQLYQESIKEFQDTLSKlkEESKKRSLE 405
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
393-601 7.63e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.91  E-value: 7.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 393 ADTNNQLKIKIQELEgyldSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNT 472
Cdd:COG4942    19 ADAAAEAEAELEQLQ----QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 473 LESTIEELEKE----------NGDLAEVNIKLNQKLANQ--------GSETDDFQAKLSVLEAEKyQQAKELQITIEDLT 534
Cdd:COG4942    95 LRAELEAQKEElaellralyrLGRQPPLALLLSPEDFLDavrrlqylKYLAPARREQAEELRADL-AELAALRAELEAER 173
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063680478 535 KQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKS 601
Cdd:COG4942   174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
61-461 2.09e-04

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 45.04  E-value: 2.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   61 LKSLEDAlQLHDVKHKELTEVKEAFDGLGLELensRKKMIELEDRIR-------ISALEAEKLE------ELQKQSASEL 127
Cdd:PRK10929    54 LNWLEER-KGSLERAKQYQQVIDNFPKLSAEL---RQQLNNERDEPRsvppnmsTDALEQEILQvssqllEKSRQAQQEQ 129
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  128 EEKLKISDErYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSsiqmqeyqeKVSKLEssLNQS 207
Cdd:PRK10929   130 DRAREISDS-LSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKA---------LVDELE--LAQL 197
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  208 SARNSELEEDLRIAL-QKGAEHEDignvstkrsVELQGLF-QTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKER 285
Cdd:PRK10929   198 SANNRQELARLRSELaKKRSQQLD---------AYLQALRnQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINR 268
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  286 DLSENLNavmeklksseerleKQAREID-------EATTRSIEL-EALhkhSELKVQKTMEDFSSRDTEAksLTEKSKDL 357
Cdd:PRK10929   269 ELSQALN--------------QQAQRMDliasqqrQAASQTLQVrQAL---NTLREQSQWLGVSNALGEA--LRAQVARL 329
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  358 EE--KIRVYEGKLAEACGQSLSLQEELDQSSAENELLAD-----TNNQLKIkiqelegyLDSEKETAIEKLNQ----KDT 426
Cdd:PRK10929   330 PEmpKPQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQAdgqplTAEQNRI--------LDAQLRTQRELLNSllsgGDT 401
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|
gi 1063680478  427 EAKDLiTKLKSHENVIEEHKRQVLEASG-----VADTRKV 461
Cdd:PRK10929   402 LILEL-TKLKVANSQLEDALKEVNEATHrylfwVADVSPI 440
COG5022 COG5022
Myosin heavy chain [General function prediction only];
42-697 2.79e-04

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 44.68  E-value: 2.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   42 KEGINKKYDDDDDEKAEKQLKSLEDALQLHdvKHKELTEVKEAFDGLGLELENSRKKMIELED---RIRISALEAEKLE- 117
Cdd:COG5022    829 EKKLRETEEVEFSLKAEVLIQKFGRSLKAK--KRFSLLKKETIYLQSAQRVELAERQLQELKIdvkSISSLKLVNLELEs 906
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  118 ---ELQKQSASELEEKLKISDERYSKTDALLSQALSQNSV------------LEQKLKSLEELSEKVSELKSALIVAEEE 182
Cdd:COG5022    907 eiiELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPsieyvklpelnkLHEVESKLKETSEEYEDLLKKSTILVRE 986
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  183 GKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSV--ELQGLFQTSQLKLEKAEEKL 260
Cdd:COG5022    987 GNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSIlkPLQKLKGLLLLENNQLQARY 1066
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  261 KDLEaIQVKNSSLEATLSVAMEKERDLSENLNAvmEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKtmedf 340
Cdd:COG5022   1067 KALK-LRRENSLLDDKQLYQLESTENLLKTINV--KDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQL----- 1138
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  341 sSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQ---SLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETA 417
Cdd:COG5022   1139 -VNTLEPVFQKLSVLQLELDGLFWEANLEALPSPppfAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGW 1217
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  418 IEKLNQKD--TEAKDLITKLKSHENVIEEHKRQVLEASgvadtRKVEVEEALLKL--NTLESTIEELEKENGDLAEVNIK 493
Cdd:COG5022   1218 PRGDKLKKliSEGWVPTEYSTSLKGFNNLNKKFDTPAS-----MSNEKLLSLLNSidNLLSSYKLEEEVLPATINSLLQY 1292
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  494 LNQKLANQGSetddfqAKLSVLEAEKYQQAKELQitIEDLTKQLTSERERLRSQISSLEeeknQVNEIYQSTKNELVKLQ 573
Cdd:COG5022   1293 INVGLFNALR------TKASSLRWKSATEVNYNS--EELDDWCREFEISDVDEELEELI----QAVKVLQLLKDDLNKLD 1360
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  574 AQLQVDKSKSDDmvsQIEKLSAlvaeksvlESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLhkelq 653
Cdd:COG5022   1361 ELLDACYSLNPA---EIQNLKS--------RYDPADKENNLPKEILKKIEALLIKQELQLSLEGKDETEVHLSEI----- 1424
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....
gi 1063680478  654 ashtaISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESK 697
Cdd:COG5022   1425 -----FSEEKSLISLDRNSIYKEEVLSSLSALLTKEKIALLDRK 1463
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
287-496 3.09e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 44.24  E-value: 3.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 287 LSENLNAVMEKLKSSEERLEKQAREIDEattrsiELEAlhkhSELKVQKTME--DFSSRDTEAKSLTEKSKDLEEKIRVY 364
Cdd:COG3206   162 LEQNLELRREEARKALEFLEEQLPELRK------ELEE----AEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEA 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 365 EGKLAEACGQSLSLQEELDQSSAE-NELLADTNNQ-LKIKIQELegyldsekETAIEKLNQKDTEAKDLITKLKSHENVI 442
Cdd:COG3206   232 RAELAEAEARLAALRAQLGSGPDAlPELLQSPVIQqLRAQLAEL--------EAELAELSARYTPNHPDVIALRAQIAAL 303
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1063680478 443 EEHKRQvlEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQ 496
Cdd:COG3206   304 RAQLQQ--EAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR 355
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
452-687 4.75e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 4.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 452 ASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEkyqqAKELQITIE 531
Cdd:COG4942    18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAELEKEIA 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 532 DLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEksvLESKFEQVE 611
Cdd:COG4942    94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE---LAALRAELE 170
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063680478 612 IHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAK 687
Cdd:COG4942   171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
37-321 5.82e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.51  E-value: 5.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  37 FVKVEKEgINKKYDDDDDEKAEKQLKSLEDALQLHDVKhkELTEVKEafdglglELENSRKKMIELEDRIRISALEAEKL 116
Cdd:PRK03918  482 LRELEKV-LKKESELIKLKELAEQLKELEEKLKKYNLE--ELEKKAE-------EYEKLKEKLIKLKGEIKSLKKELEKL 551
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 117 EELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEK 196
Cdd:PRK03918  552 EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 197 VSKLESSLNQSSARNSELEEDLRIALQKgaEHEDIGNVSTKRSVELQGLfqtsQLKLEKAEEKLKDLEAIQVKnssLEAT 276
Cdd:PRK03918  632 FEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLELSRELAGL----RAELEELEKRREEIKKTLEK---LKEE 702
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1063680478 277 LSvAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIE 321
Cdd:PRK03918  703 LE-EREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVG 746
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
91-536 6.29e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.52  E-value: 6.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   91 ELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVS 170
Cdd:TIGR02169  675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  171 ELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSarnseleedlrialqkgaehedignvstkrsvelqglFQTSQ 250
Cdd:TIGR02169  755 NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR-------------------------------------IPEIQ 797
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  251 LKLEKAEEKLKDLEAIQvknSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSE 330
Cdd:TIGR02169  798 AELSKLEEEVSRIEARL---REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE 874
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  331 LKVqktmedfssrdteaKSLTEKSKDLEEKIRVYEGKLAEacgqslsLQEELDQSSAENELLADTNNQLKIKIQELEgyl 410
Cdd:TIGR02169  875 AAL--------------RDLESRLGDLKKERDELEAQLRE-------LERKIEELEAQIEKKRKRLSELKAKLEALE--- 930
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  411 dsEKETAIEKLNQKDteakdlitklkshenvieehkrqvleasgvadtrkVEVEEALLKLNTLESTIEELEKENGDLAEV 490
Cdd:TIGR02169  931 --EELSEIEDPKGED-----------------------------------EEIPEEELSLEDVQAELQRVEEEIRALEPV 973
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*.
gi 1063680478  491 NIKLNQKLANQGSETDDFQAKLSVLEAEKyqqaKELQITIEDLTKQ 536
Cdd:TIGR02169  974 NMLAIQEYEEVLKRLDELKEKRAKLEEER----KAILERIEEYEKK 1015
PLN02939 PLN02939
transferase, transferring glycosyl groups
16-357 6.47e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 43.35  E-value: 6.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  16 EVTKEDTVMEKEEEDTIFDGgfvkvEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKELTEVkeafdglgleLENS 95
Cdd:PLN02939   76 ENTSLRTVMELPQKSTSSDD-----DHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGM----------IQNA 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  96 RKKMIELeDRIRISALEaeKLEELQKQSaSELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEK------- 168
Cdd:PLN02939  141 EKNILLL-NQARLQALE--DLEKILTEK-EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNEllirgat 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 169 ----VSELKSALIVAEEEG----------KKSSIQMQEYQEKVSKLES--SLNQSSARnsELEEDLRIAlqkgaeHEDIG 232
Cdd:PLN02939  217 eglcVHSLSKELDVLKEENmllkddiqflKAELIEVAETEERVFKLEKerSLLDASLR--ELESKFIVA------QEDVS 288
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 233 NVSTKR------SVE-LQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDlSENLNAVMEKLKSSEERL 305
Cdd:PLN02939  289 KLSPLQydcwweKVEnLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS-SYKVELLQQKLKLLEERL 367
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063680478 306 EKQAREIDEATTrsieleaLHKHSELKVQKTMEDFSSrDTEAKSLTEKSKDL 357
Cdd:PLN02939  368 QASDHEIHSYIQ-------LYQESIKEFQDTLSKLKE-ESKKRSLEHPADDM 411
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
521-708 6.78e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.08  E-value: 6.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 521 QQAKELQITIEDLTKQLtsERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEK 600
Cdd:COG3206   182 EQLPELRKELEEAEAAL--EEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 601 SV------LESKFEQVEIHLKEEVEKVAELTSKLQEHKHKasdRDVLEEkaiQLHKELQASHTAISEQKEALSHKhselE 674
Cdd:COG3206   260 LQspviqqLRAQLAELEAELAELSARYTPNHPDVIALRAQ---IAALRA---QLQQEAQRILASLEAELEALQAR----E 329
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1063680478 675 ATLKKSQEELDAKKSVIVHLESKLNELEQKVKLA 708
Cdd:COG3206   330 ASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
139-725 8.73e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.80  E-value: 8.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  139 SKTDALLSQALSQNSVLeqkLKSLEELSEKVSELKSALivaeEEGKKSsiqmqeYQEKVSKLESSLNQSsarNSELEEDL 218
Cdd:pfam15921  299 SQLEIIQEQARNQNSMY---MRQLSDLESTVSQLRSEL----REAKRM------YEDKIEELEKQLVLA---NSELTEAR 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  219 RIALQKGAEHEDIGNVSTKRSVELQGlfQTSQLKLEKaeEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKL 298
Cdd:pfam15921  363 TERDQFSQESGNLDDQLQKLLADLHK--REKELSLEK--EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAM 438
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  299 KSS-EERLEKQAREI---DEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLeekirvyegklaeacgq 374
Cdd:pfam15921  439 KSEcQGQMERQMAAIqgkNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL----------------- 501
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  375 SLSLQEELDQSSAENELLADTNNQLKIKIQELEgYLDSEKEtaieKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASG 454
Cdd:pfam15921  502 TASLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGD----HLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  455 VADTRKVEVEEALLKLNTLESTIEELEKEngdLAEVNIKLNQKlanqGSETDDFQAKLSVLEAEKyqqakelqitiedlT 534
Cdd:pfam15921  577 LVGQHGRTAGAMQVEKAQLEKEINDRRLE---LQEFKILKDKK----DAKIRELEARVSDLELEK--------------V 635
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  535 KQLTSERERLRSqISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDK----SKSDDMVSQIEKLSALVAEKsvlESKFEQV 610
Cdd:pfam15921  636 KLVNAGSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKrnfrNKSEEMETTTNKLKMQLKSA---QSELEQT 711
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  611 EIHLKE------EVEKVA-----ELTSKLQEHKHKASDRDVLEEKAIQLHKELQAshtaISEQKEALSHKHSELEATLKK 679
Cdd:pfam15921  712 RNTLKSmegsdgHAMKVAmgmqkQITAKRGQIDALQSKIQFLEEAMTNANKEKHF----LKEEKNKLSQELSTVATEKNK 787
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*.
gi 1063680478  680 SQEELDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEVE 725
Cdd:pfam15921  788 MAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
PRK01156 PRK01156
chromosome segregation protein; Provisional
55-599 9.25e-04

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 42.97  E-value: 9.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  55 EKAEKQLKSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAEKLEElQKQSASELEEKLKIS 134
Cdd:PRK01156  200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAES-DLSMELEKNNYYKEL 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 135 DERYSKTDALLSQAlSQNSVLE--QKLKSLEELSEKVSELKSALIVAEEEGKKSS---------IQMQEYQEKVSKLESS 203
Cdd:PRK01156  279 EERHMKIINDPVYK-NRNYINDyfKYKNDIENKKQILSNIDAEINKYHAIIKKLSvlqkdyndyIKKKSRYDDLNNQILE 357
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 204 LNQ-SSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAME 282
Cdd:PRK01156  358 LEGyEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRE 437
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 283 KERDLSENLNAvmeklksseerLEKQAREIDEATTRSIE-LEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKI 361
Cdd:PRK01156  438 NLDELSRNMEM-----------LNGQSVCPVCGTTLGEEkSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK 506
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 362 RVYEGKLAEacgQSLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHEnv 441
Cdd:PRK01156  507 EYLESEEIN---KSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLID-- 581
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 442 ieehkrqvleasgvADTRKVEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANqgsETDDFQAKLSVLEAEKyQ 521
Cdd:PRK01156  582 --------------IETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIEN---EANNLNNKYNEIQENK-I 643
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063680478 522 QAKELQITIEDLTKQLTSERERLRSQiSSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAE 599
Cdd:PRK01156  644 LIEKLRGKIDNYKKQIAEIDSIIPDL-KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIND 720
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
317-748 9.28e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.70  E-value: 9.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 317 TRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAEN------- 389
Cdd:TIGR04523 124 VELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlklelll 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 390 ---ELLADTNNQLKIKIQELEGYLDSEKETAIEK---LNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEV 463
Cdd:TIGR04523 204 snlKKKIQKNKSLESQISELKKQNNQLKDNIEKKqqeINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 464 EEALLKLNTLESTIEELEKENGdlAEVNIKLNQKLANQGSETDDFQAKLSvleaEKYQQAKELQITIEDLTKQLTSerer 543
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQEKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTN---- 353
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 544 LRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKVAE 623
Cdd:TIGR04523 354 SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 624 LTSKLQEHKHKASDRDVLEEKAIqlhKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQ 703
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELII---KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEE 510
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1063680478 704 KVKLADAKSKETESTGKEEEVEVKSRDSDLSFSNPKQTKIKKNLD 748
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK 555
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
101-706 9.40e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 42.73  E-value: 9.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  101 ELEDRIRISALEAEKLEELQKQSASELEEKlkiSDERYSKTDALLSQALSQNSVLEQklkslEELSEKVSELKSALIVAE 180
Cdd:TIGR00606  372 SLATRLELDGFERGPFSERQIKNFHTLVIE---RQEDEAKTAAQLCADLQSKERLKQ-----EQADEIRDEKKGLGRTIE 443
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  181 EEGKKSSIQMQEYQEKVSKLESsLNQSSARNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQglFQTSQLKLEKAEEKL 260
Cdd:TIGR00606  444 LKKEILEKKQEELKFVIKELQQ-LEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKS--LQNEKADLDRKLRKL 520
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  261 -KDLEAIQVKNSSLEATLSVA---MEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELealhKHSELKVQKT 336
Cdd:TIGR00606  521 dQEMEQLNHHTTTRTQMEMLTkdkMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEI----NQTRDRLAKL 596
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  337 MEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSL------SLQEELDQSSAENELLADTNNQLKIKIQELEGYl 410
Cdd:TIGR00606  597 NKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDeesdleRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE- 675
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  411 DSEKETAIEKLNQKDTEAKDLITKLkshENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAEV 490
Cdd:TIGR00606  676 NQSCCPVCQRVFQTEAELQEFISDL---QSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNK 752
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  491 NIKLNQKLANQGSETDDFQAKLSVLEAEKyQQAKELQITIEDLtkqltserERLRSQISSLEEEKNQVNEIYQSTKNELV 570
Cdd:TIGR00606  753 LQKVNRDIQRLKNDIEEQETLLGTIMPEE-ESAKVCLTDVTIM--------ERFQMELKDVERKIAQQAAKLQGSDLDRT 823
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  571 --KLQAQLQVDKSKSDDMVSQIEKLSALVAEKsvleskfEQVEIHLKEeveKVAELTSKLQEHKHKASDRDVLEEKAIQL 648
Cdd:TIGR00606  824 vqQVNQEKQEKQHELDTVVSKIELNRKLIQDQ-------QEQIQHLKS---KTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1063680478  649 HKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVK 706
Cdd:TIGR00606  894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
72-639 1.05e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.90  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   72 DVKHKELTEVKEAFDGLGLELE---NSRKKMIELEDRIRISALEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQA 148
Cdd:pfam12128  404 EARDRQLAVAEDDLQALESELReqlEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAA 483
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  149 LSQNSVLEQKLKSLEELSEK-----------VSELKSALIVAEEEGKKSSIQMQEYqekVSKLESSLNQSSARNSELEED 217
Cdd:pfam12128  484 NAEVERLQSELRQARKRRDQasealrqasrrLEERQSALDELELQLFPQAGTLLHF---LRKEAPDWEQSIGKVISPELL 560
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  218 LRIALQKGAEHEDIGNVSTKRSVELqglfqtsQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEK 297
Cdd:pfam12128  561 HRTDLDPEVWDGSVGGELNLYGVKL-------DLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGE 633
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  298 LKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQktmedfssrdteaKSLTEKSKDLEEKIRVYEGKLAEACGQSLS 377
Cdd:pfam12128  634 LEKASREETFARTALKNARLDLRRLFDEKQSEKDKKN-------------KALAERKDSANERLNSLEAQLKQLDKKHQA 700
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  378 LQEELDQSSAENELladtnnQLKIKIQELEGYLDSeketaieKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVAD 457
Cdd:pfam12128  701 WLEEQKEQKREART------EKQAYWQVVEGALDA-------QLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDP 767
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  458 TRKVEVEEallKLNTLESTIEELEKENGDLAEVNIKLNQKLAnqgSETDDFQAKLSVLEaekyQQAKELQITIEDLTKQL 537
Cdd:pfam12128  768 DVIAKLKR---EIRTLERKIERIAVRRQEVLRYFDWYQETWL---QRRPRLATQLSNIE----RAISELQQQLARLIADT 837
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  538 TSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLqAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEE 617
Cdd:pfam12128  838 KLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKL-ATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHF 916
                          570       580
                   ....*....|....*....|...
gi 1063680478  618 VEKVAELT-SKLQEHKHKASDRD 639
Cdd:pfam12128  917 KNVIADHSgSGLAETWESLREED 939
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
96-702 1.21e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.41  E-value: 1.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   96 RKKMIELEDRIRISALEAEKLEELQK---QSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKV-SE 171
Cdd:pfam15921  109 RQSVIDLQTKLQEMQMERDAMADIRRresQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVlQE 188
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  172 LKSALIVAEE-EGKK-------SSIQMQEYQEKVSKLESSLN---------------QSSARNSELEEDLRIALQkgaEH 228
Cdd:pfam15921  189 IRSILVDFEEaSGKKiyehdsmSTMHFRSLGSAISKILRELDteisylkgrifpvedQLEALKSESQNKIELLLQ---QH 265
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  229 ED-IGNVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKN-----------SSLEATLSvamEKERDLSENLNAVME 296
Cdd:pfam15921  266 QDrIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsmymrqlSDLESTVS---QLRSELREAKRMYED 342
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  297 KLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKirvyegklaeACGQSL 376
Cdd:pfam15921  343 KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR----------DTGNSI 412
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  377 S---LQEELDQSSAENELLADTnnqLKIKIQELEGYLDSEKeTAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEAS 453
Cdd:pfam15921  413 TidhLRRELDDRNMEVQRLEAL---LKAMKSECQGQMERQM-AAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKK 488
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  454 GVADTRKVEVEEALLKLNTLESTIEELEKENGDL-AEVNIKLN--QKLANQGSETDDFQAKLSVLEAEKYQQAKELQI-- 528
Cdd:pfam15921  489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLrSRVDLKLQelQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEIlr 568
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  529 -TIEDLTkQLTSERERlrsQISSLEEEKNQVNEIYQSTKNELvklqAQLQVDKSKSDDMVSQieklsalvaeksvLESKF 607
Cdd:pfam15921  569 qQIENMT-QLVGQHGR---TAGAMQVEKAQLEKEINDRRLEL----QEFKILKDKKDAKIRE-------------LEARV 627
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  608 EQVEIhlkEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAK 687
Cdd:pfam15921  628 SDLEL---EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSA 704
                          650
                   ....*....|....*
gi 1063680478  688 KSVIVHLESKLNELE 702
Cdd:pfam15921  705 QSELEQTRNTLKSME 719
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
254-489 1.26e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.06  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 254 EKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEAlhkhselkv 333
Cdd:COG4942    20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK--------- 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 334 qktmedfsSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQELEG---YL 410
Cdd:COG4942    91 --------EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAdlaEL 162
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063680478 411 DSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAE 489
Cdd:COG4942   163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
76-707 1.45e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.31  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  76 KELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAEKLEelqkQSASELEEKLKISDERYSKTDALLSQALSQNSVL 155
Cdd:TIGR04523  40 KKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILE----QQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 156 EQKLKSLEElseKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDIGNVS 235
Cdd:TIGR04523 116 KEQKNKLEV---ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 236 TKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEA 315
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 316 TTRSIELEALHKHSELKVQKTMEDFSSRDTEA-----KSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENE 390
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 391 LLADTNNQLKIKIQElegyldseKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTrkveveeallKL 470
Cdd:TIGR04523 353 NSESENSEKQRELEE--------KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE----------QI 414
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 471 NTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKyqqaKELQITIEDLTKQLTSERERLRSQISS 550
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTR----ESLETQLKVLSRSINKIKQNLEQKQKE 490
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 551 LEEEKNQVNEIYQSTKNelvkLQAQLQVDKSKSDDMVSQIEKLSALVAEK----SVLESKFEQVEIHLKEEV--EKVAEL 624
Cdd:TIGR04523 491 LKSKEKELKKLNEEKKE----LEEKVKDLTKKISSLKEKIEKLESEKKEKeskiSDLEDELNKDDFELKKENleKEIDEK 566
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 625 TSKLQEHKHKASDRDVLEEKAIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQK 704
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQE 646

                  ...
gi 1063680478 705 VKL 707
Cdd:TIGR04523 647 VKQ 649
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
8-725 1.73e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 41.88  E-value: 1.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478    8 SSDVPQAKEVTKEDTVMEKEEEDTIFDGGFVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLHDVKHKELTEVKeafdg 87
Cdd:pfam02463  310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE----- 384
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   88 lglelensrkkmiELEDRIRISALEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSE 167
Cdd:pfam02463  385 -------------RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKE 451
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  168 KVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLnqssaRNSELEEDLRIALQKGAEHEDIGNVSTKRSVELQGLFQ 247
Cdd:pfam02463  452 ELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL-----LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIIS 526
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  248 TSQLKLEKAEEKlkdlEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHK 327
Cdd:pfam02463  527 AHGRLGDLGVAV----ENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI 602
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  328 HSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAENELLADTNNQLKIKIQELE 407
Cdd:pfam02463  603 LNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQ 682
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  408 GYLDSEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDL 487
Cdd:pfam02463  683 EKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEK 762
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  488 AEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKN 567
Cdd:pfam02463  763 EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 842
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  568 ELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKASDRD---VLEEK 644
Cdd:pfam02463  843 KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEkenEIEER 922
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  645 AIQLHKELQASHT---------AISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLADAKSKET 715
Cdd:pfam02463  923 IKEEAEILLKYEEepeellleeADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
                          730
                   ....*....|
gi 1063680478  716 ESTGKEEEVE 725
Cdd:pfam02463 1003 EKKKLIRAII 1012
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
58-323 1.98e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 41.45  E-value: 1.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  58 EKQLKSLEDALQLHDVKH-KELTEVKEAFdglglELENSRKKMIELEDRIRI--SALEAEKL--EELQKQSASELEEKLK 132
Cdd:PRK05771   15 KSYKDEVLEALHELGVVHiEDLKEELSNE-----RLRKLRSLLTKLSEALDKlrSYLPKLNPlrEEKKKVSVKSLEELIK 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 133 ISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNS 212
Cdd:PRK05771   90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENV 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 213 ELEEDLrialqkgaehEDIGNVstkrsvelqgLFQTSQLKLEKAEEKLKDLEAIQVKNS---SLEATLSVAMEKERDLSE 289
Cdd:PRK05771  170 EYISTD----------KGYVYV----------VVVVLKELSDEVEEELKKLGFERLELEeegTPSELIREIKEELEEIEK 229
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1063680478 290 NLNAVMEKLKSSEERLEKQAREIDEATtrSIELE 323
Cdd:PRK05771  230 ERESLLEELKELAKKYLEELLALYEYL--EIELE 261
PTZ00121 PTZ00121
MAEBL; Provisional
295-728 2.71e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 2.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  295 MEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDfSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQ 374
Cdd:PTZ00121  1069 DEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEE-ARKAEEAKKKAEDARKAEEARKAEDARKAEEARK 1147
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  375 SLSLQEELDQSSAENELLADTNNQLKIKIQELEGYLDSEKETAIEKlnQKDTEAKDLITKLKSHENVIEEHKRQVLEASG 454
Cdd:PTZ00121  1148 AEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEEL--RKAEDARKAEAARKAEEERKAEEARKAEDAKK 1225
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  455 VADTRKVEV----EEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQITI 530
Cdd:PTZ00121  1226 AEAVKKAEEakkdAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  531 EdlTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSAlvAEKSVLESKFEQV 610
Cdd:PTZ00121  1306 E--AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA--AEKKKEEAKKKAD 1381
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  611 EIHLK-EEVEKVAELTSKLQEHKHKASDRDVLEE---KAIQLHKELQASHTAISEQKEALSHKHSE---LEATLKKSQEE 683
Cdd:PTZ00121  1382 AAKKKaEEKKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKKKAEEAKKADeakKKAEEAKKAEE 1461
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*
gi 1063680478  684 LDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEVEVKS 728
Cdd:PTZ00121  1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
503-627 2.95e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 41.22  E-value: 2.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 503 SETDDFQAKLSVLEAEKYQQAKElqitiedlTKQLTSER-ERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQvdks 581
Cdd:COG0542   411 EELDELERRLEQLEIEKEALKKE--------QDEASFERlAELRDELAELEEELEALKARWEAEKELIEEIQELKE---- 478
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1063680478 582 ksdDMVSQIEKLSALVAEKSVLESKFEQVEIHLKEEV--EKVAELTSK 627
Cdd:COG0542   479 ---ELEQRYGKIPELEKELAELEEELAELAPLLREEVteEDIAEVVSR 523
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
462-708 3.31e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 41.07  E-value: 3.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 462 EVEEALLKLNTLEstIEELEKE-----NGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKYQQAKELQ-------IT 529
Cdd:PRK05771   20 EVLEALHELGVVH--IEDLKEElsnerLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIkdveeelEK 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 530 IEDLTKQLTSERERLRSQISSLEEEKNQVnEIYQSTKNELVKLQAQL-------QVDKSKSDDMVSQIEKLSALVAEKSV 602
Cdd:PRK05771   98 IEKEIKELEEEISELENEIKELEQEIERL-EPWGNFDLDLSLLLGFKyvsvfvgTVPEDKLEELKLESDVENVEYISTDK 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 603 LESKFeqVEIHLKEEVEKVAELTSKLQehkhkasdrdvLEEKAIQLHKELQAshtAISEQKEALSHKHSELEATLKK--- 679
Cdd:PRK05771  177 GYVYV--VVVVLKELSDEVEEELKKLG-----------FERLELEEEGTPSE---LIREIKEELEEIEKERESLLEElke 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 1063680478 680 -SQEELDAKKSVIVHLESKLNELEQKVKLA 708
Cdd:PRK05771  241 lAKKYLEELLALYEYLEIELERAEALSKFL 270
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
517-697 3.53e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.05  E-value: 3.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  517 AEKYQQAKELQITIEDLTKQLTSERERLRSQIssLEEEKNQVNEIYQSTKNELVKLQAQLQVDKSKSDDMVSQIEKLSAl 596
Cdd:COG4913    261 AERYAAARERLAELEYLRAALRLWFAQRRLEL--LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG- 337
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  597 vAEKSVLESKFEQVEIHLKEEVEKVAELTSKLQEHKHKA-SDRDVLEEkaiqLHKELQASHTAISEQKEALSHKHSELEA 675
Cdd:COG4913    338 -DRLEQLEREIERLERELEERERRRARLEALLAALGLPLpASAEEFAA----LRAEAAALLEALEEELEALEEALAEAEA 412
                          170       180
                   ....*....|....*....|..
gi 1063680478  676 TLKKSQEELDAKKSVIVHLESK 697
Cdd:COG4913    413 ALRDLRRELRELEAEIASLERR 434
CCDC14 pfam15254
Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing ...
374-499 3.81e-03

Coiled-coil domain-containing protein 14; This protein family, Coiled-coil domain-containing protein 14 (CCDC14) is a domain of unknown function. This family of proteins is found in eukaryotes. Proteins in this family are typically between 301 and 912 amino acids in length.


Pssm-ID: 464594  Cd Length: 857  Bit Score: 40.94  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 374 QSL--SLQEELDQSSAENELLADTNNQLkIKIQElegyldseketaieklNQKDtEAKDLITKLKSHENVIEEHKRQvle 451
Cdd:pfam15254 433 QSLnmSLQNQLQESLKSQELLQSKNEEL-LKVIE----------------NQKE-ENKKLTKIFKEKEQTLLENKQQ--- 491
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1063680478 452 aSGVADTR-KVEVEEALLKLNTLESTIEELEKENGDLAevnIKLNQKLA 499
Cdd:pfam15254 492 -FDIETTRvKIELEEALVNMKSFQFKLEAAEKENQILG---ITLRQRDA 536
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
91-319 3.86e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 3.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  91 ELENSRKKMIELEDRIRisalEAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLE------- 163
Cdd:COG4942    21 AAAEAEAELEQLQQEIA----ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkeiaelr 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 164 -ELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESS---LNQSSARNSELEEDLRIALQKGAEHEDignvstkrs 239
Cdd:COG4942    97 aELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRA--------- 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 240 vELQGLFQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRS 319
Cdd:COG4942   168 -ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
PRK01156 PRK01156
chromosome segregation protein; Provisional
145-725 4.51e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 40.66  E-value: 4.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 145 LSQALSQNSVLEQKLKS----LEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSE---LEED 217
Cdd:PRK01156  178 LRAEISNIDYLEEKLKSsnleLENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMknrYESE 257
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 218 LRialqkgaehedignvstkrsvelqglfqTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEK 297
Cdd:PRK01156  258 IK----------------------------TAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN 309
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 298 LKSSEERLEKQAREIDEATTRSIELEALHKHSELKvQKTMEDFssrDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLS 377
Cdd:PRK01156  310 KKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKK-KSRYDDL---NNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN 385
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 378 LQEELDQSSAENELLADTNNQLKIKIQELEGYLDsEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVAD 457
Cdd:PRK01156  386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQ-DISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGE 464
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 458 TRKVE-VEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSEtddfqaKLSVLEAEkYQQAKELQITIEDLTKQ 536
Cdd:PRK01156  465 EKSNHiINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE------EINKSINE-YNKIESARADLEDIKIK 537
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 537 LTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQ-----LQVDKSKSDDMVSQIEKLSALVAEksvLESKFEQVE 611
Cdd:PRK01156  538 INELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVislidIETNRSRSNEIKKQLNDLESRLQE---IEIGFPDDK 614
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 612 IHLKEEVEKVAELTSKLQEHKHKASDRDVLEEK---AIQLHKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAKK 688
Cdd:PRK01156  615 SYIDKSIREIENEANNLNNKYNEIQENKILIEKlrgKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAK 694
                         570       580       590
                  ....*....|....*....|....*....|....*...
gi 1063680478 689 SVIVHLESKLNELEQKV-KLADAKSKETESTGKEEEVE 725
Cdd:PRK01156  695 ANRARLESTIEILRTRInELSDRINDINETLESMKKIK 732
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
419-724 4.55e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 40.82  E-value: 4.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  419 EKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELEKENGdlaevniKLNQKL 498
Cdd:TIGR02169  681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS-------SLEQEI 753
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  499 ANQGSETDDFQAKLSVLEAEKyqqaKELQITIEDLTKQLTSER-ERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQ 577
Cdd:TIGR02169  754 ENVKSELKELEARIEELEEDL----HKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  578 VDKSKSDDMVSQIEKLsalvaeksvleskfeqvEIHLKEEVEKVAELTSKLQEHKHKASDRDVLEEKAIQLHKELQASHT 657
Cdd:TIGR02169  830 YLEKEIQELQEQRIDL-----------------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063680478  658 AISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLADAKSKETESTGKEEEV 724
Cdd:TIGR02169  893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE 959
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
155-371 5.76e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.75  E-value: 5.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 155 LEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDignV 234
Cdd:COG4942    29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE---E 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 235 STKRSVELQGLFQTSQLKLEKAEEKLKDLeaiqVKNSSLEATLSVAMEKE-RDLSENLNAVMEKLKSSEERLEKQAREID 313
Cdd:COG4942   106 LAELLRALYRLGRQPPLALLLSPEDFLDA----VRRLQYLKYLAPARREQaEELRADLAELAALRAELEAERAELEALLA 181
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1063680478 314 EATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEA 371
Cdd:COG4942   182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
296-564 6.35e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.28  E-value: 6.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  296 EKLKSSEERLEKQAREIDEATTRSIELEALHKHSE--LKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIrvyegklaeacg 373
Cdd:COG4913    610 AKLAALEAELAELEEELAEAEERLEALEAELDALQerREALQRLAEYSWDEIDVASAEREIAELEAEL------------ 677
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  374 qslslqEELDQSSAENELLADTNNQLKIKIQELEGYLDsEKETAIEKLNQKDTEAKDLITKLKSHENVIEEHKRQVLEAS 453
Cdd:COG4913    678 ------ERLDASSDDLAALEEQLEELEAELEELEEELD-ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  454 GVADTRKVEVEEALLKL-----NTLESTIEELEKENGDLAEVNIKLNQKLANQGSETD-------DFQAKLSVLEA---- 517
Cdd:COG4913    751 LEERFAAALGDAVERELrenleERIDALRARLNRAEEELERAMRAFNREWPAETADLDadleslpEYLALLDRLEEdglp 830
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 1063680478  518 EKYQQAKELqitiedLTKQLTSERERLRSQI-SSLEEEKNQVNEIYQS 564
Cdd:COG4913    831 EYEERFKEL------LNENSIEFVADLLSKLrRAIREIKERIDPLNDS 872
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
77-600 7.02e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 40.09  E-value: 7.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  77 ELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEAEKLEELQKQSASELEEkLKISDERysktdallsqALSQNSVLE 156
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED-IKMSLQR----------SMSTQKALE 316
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 157 QKLKSLEELSEKVSELKSALIVAEEEGKKS-SIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIAL----QKGAEHEDI 231
Cdd:pfam05483 317 EDLQIATKTICQLTEEKEAQMEELNKAKAAhSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITmelqKKSSELEEM 396
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 232 GNVSTKRSVELQGL---FQTSQLKLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQ 308
Cdd:pfam05483 397 TKFKNNKEVELEELkkiLAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 309 AREIDEATTRSIELEALHKHSELKVQKTMEDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAE 388
Cdd:pfam05483 477 KTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREE 556
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 389 NELLADTNNQLKIKIQELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHENVIEE--HKRQVLEASGVADTRKVEVEEa 466
Cdd:pfam05483 557 FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEElhQENKALKKKGSAENKQLNAYE- 635
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 467 lLKLNTLESTIEELEKENGDLAEVNIKL--NQKLANQGSETDDFQAKLSVLEAEKYQqaKELQITIEDLTKQLTSERERL 544
Cdd:pfam05483 636 -IKVNKLELELASAKQKFEEIIDNYQKEieDKKISEEKLLEEVEKAKAIADEAVKLQ--KEIDKRCQHKIAEMVALMEKH 712
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063680478 545 RSQISSLEEEKNQVNEIYQST------------------KNELVKLQAQLQVDKSKSDDMVSQIEKLSALVAEK 600
Cdd:pfam05483 713 KHQYDKIIEERDSELGLYKNKeqeqssakaaleielsniKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
PRK09039 PRK09039
peptidoglycan -binding protein;
544-706 7.43e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 39.18  E-value: 7.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 544 LRSQISSLEEEKNQVNeiyqstkNELVKLQAQLQVDKSKSDDMVSQIEKLSALV----AEKSVLESKFEQVEIHLKEEVE 619
Cdd:PRK09039   44 LSREISGKDSALDRLN-------SQIAELADLLSLERQGNQDLQDSVANLRASLsaaeAERSRLQALLAELAGAGAAAEG 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478 620 KVAELTSKLqehkhkASDRDVLEEKAIQLhkelqashTAISEQKEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLN 699
Cdd:PRK09039  117 RAGELAQEL------DSEKQVSARALAQV--------ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182

                  ....*...
gi 1063680478 700 -ELEQKVK 706
Cdd:PRK09039  183 vALAQRVQ 190
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
91-467 8.31e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 39.94  E-value: 8.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478   91 ELENSRKKMIELEDRIRISALEAEKLEELQkqsaSELEEKLKISDERYsktdALLSQALSQNSVLEQKLKSLEELSEKVS 170
Cdd:COG3096    293 ELFGARRQLAEEQYRLVEMARELEELSARE----SDLEQDYQAASDHL----NLVQTALRQQEKIERYQEDLEELTERLE 364
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  171 ELKSALIVAEEEGKKSSIQMQEYQEKVSKLES-------SLNQSSARNSELEEDLRiALQKGAEHEDIGNVSTKRSVELQ 243
Cdd:COG3096    365 EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSqladyqqALDVQQTRAIQYQQAVQ-ALEKARALCGLPDLTPENAEDYL 443
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  244 glfQTSQLKLEKAEEKLKDLE--------AIQVKNSSLEATLSVAMEKERD------------------LSENLNAVMEK 297
Cdd:COG3096    444 ---AAFRAKEQQATEEVLELEqklsvadaARRQFEKAYELVCKIAGEVERSqawqtarellrryrsqqaLAQRLQQLRAQ 520
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  298 LKSSEERLEKQ--AREIdeattrsieLEALHKHSELKVQKTMEdfssrdteaksLTEKSKDLEEKIRVYEGKLAEACGQS 375
Cdd:COG3096    521 LAELEQRLRQQqnAERL---------LEEFCQRIGQQLDAAEE-----------LEELLAELEAQLEELEEQAAEAVEQR 580
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  376 LSLQEELDQSSAENELLAD------TNNQLKIKIQELEG--YLDSEKETA-IEKLNQKDTEAKDLITKLKSHENVIEEHK 446
Cdd:COG3096    581 SELRQQLEQLRARIKELAArapawlAAQDALERLREQSGeaLADSQEVTAaMQQLLEREREATVERDELAARKQALESQI 660
                          410       420
                   ....*....|....*....|.
gi 1063680478  447 RQVLEASGVADTRKVEVEEAL 467
Cdd:COG3096    661 ERLSQPGGAEDPRLLALAERL 681
PRK11281 PRK11281
mechanosensitive channel MscK;
250-687 8.46e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 39.89  E-value: 8.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  250 QLKLEKAEeKLKDLEAiQVKNSS--LEATLSVAMEKERDLSENlnavmEKLKsseERLEKQAREIDEATTrsiELEALHK 327
Cdd:PRK11281    42 QAQLDALN-KQKLLEA-EDKLVQqdLEQTLALLDKIDRQKEET-----EQLK---QQLAQAPAKLRQAQA---ELEALKD 108
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  328 HSELKVQKTMEDFSSRDTEAKsLTEKSKDLEEkirvYEGKLAEACGQSLSLQEELDQssAENELlaDTNNQlkiKIQELE 407
Cdd:PRK11281   109 DNDEETRETLSTLSLRQLESR-LAQTLDQLQN----AQNDLAEYNSQLVSLQTQPER--AQAAL--YANSQ---RLQQIR 176
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  408 GYLDSEKEtaieklNQKDTEAkDLITKLkshenvieehkrqvleasgvadtrkvEVEEALLklntlestieelekengdl 487
Cdd:PRK11281   177 NLLKGGKV------GGKALRP-SQRVLL--------------------------QAEQALL------------------- 204
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  488 aEVNIKLNQK-LANQGSETDDFQAKLSVLEAEKYQQAKELQiTIEDL--TKQLTSERERLRSQISSLEEEKNQVNEIyqs 564
Cdd:PRK11281   205 -NAQNDLQRKsLEGNTQLQDLLQKQRDYLTARIQRLEHQLQ-LLQEAinSKRLTLSEKTVQEAQSQDEAARIQANPL--- 279
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  565 tknelvkLQAQLQVDKSKSDDMVSQIEKLSALVAE----KSVLESkFEQVEIHLKEEVE--KVAELTSK-LQEHKHKASD 637
Cdd:PRK11281   280 -------VAQELEINLQLSQRLLKATEKLNTLTQQnlrvKNWLDR-LTQSERNIKEQISvlKGSLLLSRiLYQQQQALPS 351
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 1063680478  638 RDVLEEKAIQLhKELQASHTAISEQKEALSHKHSELEATLKKSQEELDAK 687
Cdd:PRK11281   352 ADLIEGLADRI-ADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDE 400
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
427-661 9.15e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.51  E-value: 9.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  427 EAKDLITKLKSHENVIEEHKRQVlEASGVADTRKVEVEEALLKLNTLESTIEELEKENGDLAevNIKLNQKLANQGSETD 506
Cdd:COG4913    229 ALVEHFDDLERAHEALEDAREQI-ELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELA 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063680478  507 DFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKLQAQLQVDKsksDDM 586
Cdd:COG4913    306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---EEF 382
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063680478  587 VSQIEKLSALVAEKSVLESKFEQVEIHLKEEVEKV-AELTSKLQEHKHKASDRDVLEEKAIQLHKELqASHTAISE 661
Cdd:COG4913    383 AALRAEAAALLEALEEELEALEEALAEAEAALRDLrRELRELEAEIASLERRKSNIPARLLALRDAL-AEALGLDE 457
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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