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    LOG2 Putative lysine decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818172, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LOG2
    Official Full Name
    Putative lysine decarboxylase family protein
    Primary source
    TAIR:AT2G35990
    Locus tag
    AT2G35990
    See related
    Araport:AT2G35990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F19.10; F11F19_10; LONELY GUY 2
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    Genomic context

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    See LOG2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (15112084..15116776)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene E2F transcription factor 3 Neighboring gene HVA22-like protein J

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Direct control of shoot meristem activity by a cytokinin-activating enzyme. Kurakawa T, et al. Nature, 2007 Feb 8. PMID 17287810
    2. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Kuroha T, et al. Plant Cell, 2009 Oct. PMID 19837870, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results strongly suggest that the direct activation pathway via LOGs plays a pivotal role in regulating cytokinin activity during normal growth and development in Arabidopsis.
      Title: Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001124976.1
    NM_001161082.1
    NM_129158.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cytokinin riboside 5'-monophosphate phosphoribohydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinin biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Putative lysine decarboxylase family protein
    NP_001118448.1
    • Putative lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT5G06300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001154554.1
    • Putative lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT5G06300.1); Has 3929 Blast hits to 3928 proteins in 1302 species: Archae - 14; Bacteria - 2627; Metazoa - 8; Fungi - 130; Plants - 377; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).
    NP_181143.3
    • Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT5G06300.1); Has 5018 Blast hits to 5017 proteins in 1508 species: Archae - 25; Bacteria - 3489; Metazoa - 10; Fungi - 132; Plants - 385; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15112084..15116776
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161082.1 → NP_001154554.1  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154554.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ILS7
      Conserved Domains (1) summary
      pfam03641
      Location:1 → 130
      Lysine_decarbox; Possible lysine decarboxylase

    2. NM_001124976.1 → NP_001118448.1  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118448.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ILS7
      Conserved Domains (1) summary
      pfam03641
      Location:1 → 130
      Lysine_decarbox; Possible lysine decarboxylase

    3. NM_129158.4 → NP_181143.3  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181143.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BPS0, Q6DSS0, Q6DSS1, Q9SJ51
      UniProtKB/TrEMBL
      A0A5S9X4H7, A0A654EZ83
      Conserved Domains (1) summary
      pfam03641
      Location:53 → 182
      Lysine_decarbox; Possible lysine decarboxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BPS0.1

    Gene LinkOut

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