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    SEC13 SEC13 homolog, nuclear pore and COPII coat complex component [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697339, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SEC13provided by VGNC
    Official Full Name
    SEC13 homolog, nuclear pore and COPII coat complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:77149
    Locus tag
    EGK_11422
    See related
    Ensembl:ENSMMUG00000019936
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SEC13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (141709331..141729850, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (55992943..56013463)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676392 Neighboring gene uncharacterized LOC106996829 Neighboring gene ghrelin and obestatin prepropeptide Neighboring gene ATPase plasma membrane Ca2+ transporting 2 Neighboring gene microRNA mir-885

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of TOR signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein exit from endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore outer ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SEC13 homolog
    Names
    SEC13-related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266970.1 → NP_001253899.1  protein SEC13 homolog

      See identical proteins and their annotated locations for NP_001253899.1

      Status: PROVISIONAL

      Source sequence(s)
      JV047902
      UniProtKB/TrEMBL
      F7GMD0, F7HU53, H9FYB4
      Conserved Domains (2) summary
      sd00039
      Location:61 → 101
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:10 → 289
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      141709331..141729850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015130224.2 → XP_014985710.1  protein SEC13 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8J8XUN4, F7GMC8, G7MKQ7
      Related
      ENSMMUP00000026199.2, ENSMMUT00000028005.4
      Conserved Domains (2) summary
      sd00039
      Location:107 → 147
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:56 → 335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_028843137.1 → XP_028698970.1  protein SEC13 homolog isoform X2

      UniProtKB/TrEMBL
      A0A5K1U313
      Related
      ENSMMUP00000026198.4, ENSMMUT00000028004.4
      Conserved Domains (2) summary
      sd00039
      Location:64 → 104
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:13 → 292
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_028843139.1 → XP_028698972.1  protein SEC13 homolog isoform X3

      UniProtKB/TrEMBL
      A0A5K1U315
      Related
      ENSMMUP00000039771.3, ENSMMUT00000046743.3
      Conserved Domains (2) summary
      sd00039
      Location:47 → 87
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:11 → 275
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_028843138.1 → XP_028698971.1  protein SEC13 homolog isoform X2

      UniProtKB/TrEMBL
      A0A5K1U313
      Conserved Domains (2) summary
      sd00039
      Location:64 → 104
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:13 → 292
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_015130228.2 → XP_014985714.2  protein SEC13 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8J8XUN4, F7GMC8, G7MKQ7
      Conserved Domains (2) summary
      sd00039
      Location:107 → 147
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:56 → 335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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