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Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820780, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT3G15410
Locus tag
AT3G15410
See related
Araport:AT3G15410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
22
Sequence:
Chromosome: 3; NC_003074.8 (5203205..5207574)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene HrpN-interacting protein from malus protein Neighboring gene anther 20 Neighboring gene Transcription factor TFIIIC, tau55-related protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001202972.1
NM_112409.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Leucine-rich repeat (LRR) family protein
NP_001189901.1
  • Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1).
NP_188160.2
  • Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1); Has 114082 Blast hits to 37818 proteins in 1375 species: Archae - 59; Bacteria - 12764; Metazoa - 51111; Fungi - 3119; Plants - 39584; Viruses - 19; Other Eukaryotes - 7426 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5203205..5207574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112409.4 → NP_188160.2  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188160.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VE02, A0A384LB20, A0A5S9XCX7, A0A654F8H5, Q8L7Z2
    Conserved Domains (3) summary
    PRK15370
    Location:14 → 115
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    PLN00113
    Location:66 → 550
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:361 → 382
    LRR_RI; leucine-rich repeat [structural motif]

  2. NM_001202972.1 → NP_001189901.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189901.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XCX7, A0A654F8H5, F4IYR7
    Conserved Domains (3) summary
    cd00116
    Location:358 → 562
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:367 → 388
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:505 → 564
    LRR_8; Leucine rich repeat
Nucleotide Protein
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