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LOG2 Putative lysine decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818172, updated on 18-Sep-2024

Summary

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Official Symbol
LOG2
Official Full Name
Putative lysine decarboxylase family protein
Primary source
TAIR:AT2G35990
Locus tag
AT2G35990
See related
Araport:AT2G35990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11F19.10; F11F19_10; LONELY GUY 2
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Genomic context

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See LOG2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (15112084..15116776)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene E2F transcription factor 3 Neighboring gene HVA22-like protein J

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Direct control of shoot meristem activity by a cytokinin-activating enzyme. Kurakawa T, et al. Nature, 2007 Feb 8. PMID 17287810
  2. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Kuroha T, et al. Plant Cell, 2009 Oct. PMID 19837870, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Results strongly suggest that the direct activation pathway via LOGs plays a pivotal role in regulating cytokinin activity during normal growth and development in Arabidopsis.
    Title: Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_001124976.1
NM_001161082.1
NM_129158.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cytokinin riboside 5'-monophosphate phosphoribohydrolase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cytokinin biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Putative lysine decarboxylase family protein
NP_001118448.1
  • Putative lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT5G06300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001154554.1
  • Putative lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT5G06300.1); Has 3929 Blast hits to 3928 proteins in 1302 species: Archae - 14; Bacteria - 2627; Metazoa - 8; Fungi - 130; Plants - 377; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).
NP_181143.3
  • Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT5G06300.1); Has 5018 Blast hits to 5017 proteins in 1508 species: Archae - 25; Bacteria - 3489; Metazoa - 10; Fungi - 132; Plants - 385; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15112084..15116776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161082.1 → NP_001154554.1  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154554.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4ILS7
    Conserved Domains (1) summary
    pfam03641
    Location:1 → 130
    Lysine_decarbox; Possible lysine decarboxylase

  2. NM_001124976.1 → NP_001118448.1  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118448.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4ILS7
    Conserved Domains (1) summary
    pfam03641
    Location:1 → 130
    Lysine_decarbox; Possible lysine decarboxylase

  3. NM_129158.4 → NP_181143.3  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181143.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5BPS0, Q6DSS0, Q6DSS1, Q9SJ51
    UniProtKB/TrEMBL
    A0A5S9X4H7, A0A654EZ83
    Conserved Domains (1) summary
    pfam03641
    Location:53 → 182
    Lysine_decarbox; Possible lysine decarboxylase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BPS0.1

Gene LinkOut

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