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ECM2 extracellular matrix protein 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716641, updated on 17-Aug-2024

Summary

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Official Symbol
ECM2provided by VGNC
Official Full Name
extracellular matrix protein 2provided by VGNC
Primary source
VGNC:VGNC:104891
See related
Ensembl:ENSMMUG00000056929
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ECM2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (107582265..107626183, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (42734314..42783772, complement)

Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene centromere protein P Neighboring gene osteomodulin Neighboring gene asporin Neighboring gene inositol-pentakisphosphate 2-kinase Neighboring gene BICD cargo adaptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables collagen V binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell-substrate adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular matrix protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041768.1 Reference Mmul_10 Primary Assembly

    Range
    107582265..107626183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015117267.2 → XP_014972753.2  extracellular matrix protein 2 isoform X3

    UniProtKB/TrEMBL
    G7NF19
    Conserved Domains (4) summary
    PRK15370
    Location:299 → 551
    PRK15370; E3 ubiquitin-protein ligase SlrP; Provisional
    sd00033
    Location:300 → 323
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:103 → 157
    VWC; von Willebrand factor type C domain
    pfam13855
    Location:536 → 599
    LRR_8; Leucine rich repeat

  2. XM_015117265.2 → XP_014972751.2  extracellular matrix protein 2 isoform X1

    UniProtKB/TrEMBL
    G7NF19
    Conserved Domains (5) summary
    PRK15370
    Location:321 → 573
    PRK15370; E3 ubiquitin-protein ligase SlrP; Provisional
    sd00033
    Location:322 → 345
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:103 → 157
    VWC; von Willebrand factor type C domain
    pfam13855
    Location:558 → 621
    LRR_8; Leucine rich repeat
    pfam14828
    Location:116 → 207
    Amnionless

  3. XM_015117266.2 → XP_014972752.2  extracellular matrix protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZEW0, G7NF19
    Related
    ENSMMUP00000063721.1, ENSMMUT00000101491.1
    Conserved Domains (4) summary
    PRK15370
    Location:299 → 551
    PRK15370; E3 ubiquitin-protein ligase SlrP; Provisional
    sd00033
    Location:300 → 323
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:103 → 157
    VWC; von Willebrand factor type C domain
    pfam13855
    Location:536 → 599
    LRR_8; Leucine rich repeat

  4. XM_015117264.2 → XP_014972750.2  extracellular matrix protein 2 isoform X1

    UniProtKB/TrEMBL
    G7NF19
    Conserved Domains (5) summary
    PRK15370
    Location:321 → 573
    PRK15370; E3 ubiquitin-protein ligase SlrP; Provisional
    sd00033
    Location:322 → 345
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:103 → 157
    VWC; von Willebrand factor type C domain
    pfam13855
    Location:558 → 621
    LRR_8; Leucine rich repeat
    pfam14828
    Location:116 → 207
    Amnionless
Nucleotide Protein
Heading Accession and Version

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