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LOC100845611 cingulin [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100845611, updated on 6-Apr-2023

Summary

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Gene symbol
LOC100845611
Gene description
cingulin
Locus tag
BRADI_3g30277v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100845611 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (32071668..32077424)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (32373200..32378860)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene remorin Neighboring gene probable ascorbate-specific transmembrane electron transporter 1 Neighboring gene non-specific lipid-transfer protein 2-like Neighboring gene non-specific lipid-transfer protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cingulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    32071668..32077424
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003574114.4 → XP_003574162.1  cingulin isoform X1

    UniProtKB/TrEMBL
    A0A0Q3Q6S5
    Conserved Domains (2) summary
    pfam09311
    Location:419 → 683
    Rab5-bind; Rabaptin-like protein
    pfam10358
    Location:13 → 139
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins

  2. XM_014901274.2 → XP_014756760.1  cingulin isoform X2

    UniProtKB/TrEMBL
    A0A2K2D053
    Conserved Domains (2) summary
    pfam10358
    Location:2 → 105
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    cl25732
    Location:474 → 842
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_024461729.1 → XP_024317497.1  cingulin isoform X3

    UniProtKB/TrEMBL
    A0A0Q3HUZ9
    Conserved Domains (1) summary
    cl25732
    Location:317 → 685
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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